Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05385 and BL03369

See Amino acid alignment / Visit BSNT_05385 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:31
# Commandline: needle
#    -asequence dna-align/BSNT_05385___flgK.1.5803.seq
#    -bsequence dna-align/BL03369___flgK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05385___flgK-BL03369___flgK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05385___flgK-BL03369___flgK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05385___flgK
# 2: BL03369___flgK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1594
# Identity:    1059/1594 (66.4%)
# Similarity:  1059/1594 (66.4%)
# Gaps:         140/1594 ( 8.8%)
# Score: 3170.0
# 
#
#=======================================

BSNT_05385___      1 ATGACA---TCTACCTTTATGGGGCTTGAAACTGCA-----AGGCGGGCG     42
                     ||||||   .|.||.|||.|.|||||.||||..|||     ||||     
BL03369___flg      1 ATGACAAATCCAACTTTTTTAGGGCTGGAAATCGCAAAAAGAGGC-----     45

BSNT_05385___     43 TTAAGCGCTCAGCAGGCAGCTTTAAGCACTACTGCAAATAACGTGGCAAA     92
                     ||...|||.|||||..|||||.|.|||...||.|||||.||..|..|.||
BL03369___flg     46 TTGTCCGCGCAGCAATCAGCTCTGAGCGTGACAGCAAACAATATATCCAA     95

BSNT_05385___     93 TGCCAATACTGATGGTTATACAAGACAGCGGGTCTCATTGGAGGCAACGG    142
                     .||||||||.||.||.|||.||||||||||.||..||||..|.|||.|..
BL03369___flg     96 CGCCAATACCGAAGGGTATTCAAGACAGCGTGTTACATTTAAAGCATCAA    145

BSNT_05385___    143 ACTATT-TCCCTGCTGTATCTAAAAACGCAGAAAAAACAGCGGGACAAAT    191
                     .|..|| |||.| |.|||||.|.|.||.|.|....|...||.||.||.||
BL03369___flg    146 CCCCTTATCCGT-CCGTATCAAGAGACTCTGTCGGACTTGCAGGCCAGAT    194

BSNT_05385___    192 GGGTACGGGCGTTCAAGGAAA----ATCAGTTGAGAGAATAAGAGATATC    237
                     ||||||.||||||    ||||    .||.|||||.||..|.||.||.|.|
BL03369___flg    195 GGGTACAGGCGTT----GAAATCGGTTCGGTTGAAAGGGTTAGGGACAGC    240

BSNT_05385___    238 TTTCTTGACTACCAATAC----CGTCTTC--AAAACAACAGTGCCGGATA    281
                     |||||.|||||.||||||    ||    |  ||.|||| || |||||   
BL03369___flg    241 TTTCTGGACTATCAATACAGGACG----CAGAATACAA-AG-GCCGG---    281

BSNT_05385___    282 CTATGACACGAAGGCAAAAG----CGCTGT--CCCAAATGGAAGGCGTTT    325
                     ||||.||   ||.|||||||    ||||.|  .||||||||||||..||.
BL03369___flg    282 CTATTAC---AATGCAAAAGTGGACGCTTTTAACCAAATGGAAGGGATTA    328

BSNT_05385___    326 TAAATGAAACGGATGACAGCGGCTTGAACAGTGTGCTCAATTCGTTTTGG    375
                     |.||||||..|.|.||||.|||..|.||||..||.||.|||||.||.|||
BL03369___flg    329 TGAATGAACTGAACGACACCGGACTAAACAAAGTTCTGAATTCATTCTGG    378

BSNT_05385___    376 AATTCTCTGCAGGAATTATCGAATAATACAAATGAAGAAAGTGCACGTTC    425
                     |||||..|.||||||||..||||.||..|..|.|||...||.||...|||
BL03369___flg    379 AATTCCATTCAGGAATTGACGAACAACGCCCACGAACCGAGCGCTGCTTC    428

BSNT_05385___    426 TGTTGTTGCTCGAAAAGGACAAGCTGTAGCTGAAACGTTTAATTATATTT    475
                     |||||||||.|.||||||.||.||.||.||.||.||.|||||...|.|.|
BL03369___flg    429 TGTTGTTGCGCAAAAAGGGCAGGCGGTCGCCGATACATTTAACACTCTGT    478

BSNT_05385___    476 CTGAATCACTTACAAATGTCCAATCGAATTTA--AAAGCAGAGCTAAATA    523
                     .||||||.||.||||..||.|||||.||||||  ..|.||||  |..||.
BL03369___flg    479 ATGAATCGCTGACAACCGTTCAATCAAATTTAGGCGACCAGA--TTGATC    526

BSNT_05385___    524 CAACTGTGTTGGATGTCAATT--CTCTGCTT---TCTCAGTTAAACAGTT    568
                     .||.|||    ||||.|.|||  ||| ||||   ||.|||.|.|||||.|
BL03369___flg    527 AAAATGT----GATGACGATTAACTC-GCTTTTGTCCCAGCTGAACAGCT    571

BSNT_05385___    569 TAAATAAGCAAATTGCACAAGTAGAGCCGGTCGGGCT-TCTTCCGAATGG    617
                     |.||..|||||||.||..||||.||||||..| |||| |||.|||||.|.
BL03369___flg    572 TGAACGAGCAAATCGCCAAAGTCGAGCCGAAC-GGCTATCTCCCGAACGA    620

BSNT_05385___    618 CTTATATGACCAGCGAGATTTGCTGATCGATAAATTATCCTCAATGGTTG    667
                     .||.||.||..||||.|||..|||..|.|||.||.|.||.|||||||||.
BL03369___flg    621 TTTGTACGATAAGCGTGATCAGCTCCTTGATGAACTGTCTTCAATGGTTA    670

BSNT_05385___    668 ATATCAAAGTCAGCTACAACAAATCAGGCGGGAATGCACTTGCATCTGCT    717
                     ||||||||||||||||....|||.|.|||||.|||.||||.|||.|.|||
BL03369___flg    671 ATATCAAAGTCAGCTATGCGAAAACCGGCGGCAATCCACTCGCAACCGCT    720

BSNT_05385___    718 GAAGGAACTGTATCAATTGAAATCCTTGATAAAAATAAA----CAGTCGC    763
                     |||||.|.|||.|||||.|||.||||||    |..||||    |||||.|
BL03369___flg    721 GAAGGCATTGTGTCAATAGAAGTCCTTG----ACGTAAACGGCCAGTCTC    766

BSNT_05385___    764 TAGGAACTGTTTTGGACGG--TAAAAATTACGAGGTTTCAGAACTTG---    808
                     |.||.|..|||.|.|||||  .|||..|.||||     |.|||..||   
BL03369___flg    767 TGGGCAAGGTTCTTGACGGGCCAAACTTCACGA-----CTGAAACTGTCA    811

BSNT_05385___    809 CAGCCAACTATGATAATGAAACTGGGTTAGTATCAAGTATTTCAATCG--    856
                     .||..||.||.||.||.||.||.||..|.||..|..|..||||..|||  
BL03369___flg    812 AAGTGAATTACGACAACGATACAGGCCTTGTGACGGGCGTTTCCCTCGGC    861

BSNT_05385___    857 GGGA--TACAGCTGTGCAGGC--GGAGTCCTTTAGCAGCAAGGGATCCCT    902
                     ||||  .|||.|      |||  .||.||.||||..|||||.||.|||||
BL03369___flg    862 GGGACGGACATC------GGCATCGATTCGTTTACTAGCAAAGGGTCCCT    905

BSNT_05385___    903 TTTAGGATTTATAGAGTCTTACGGGTATATAACAG-CAGACGGCCAAGAA    951
                     ..|.||.||.||.||.||||||||.|||||    | ||.||||..|||||
BL03369___flg    906 GCTCGGTTTAATCGAATCTTACGGATATAT----GTCAAACGGTGAAGAA    951

BSNT_05385___    952 AAGGGCGTATACCCGGAAATGCTTTCTGATCTTGACAATATGGCGCTTGA   1001
                     ||.||..|.||.||.||||||||..|.|||||.||.|..||||||||||.
BL03369___flg    952 AAAGGTTTGTATCCCGAAATGCTCGCAGATCTGGATACGATGGCGCTTGC   1001

BSNT_05385___   1002 ATTCGCGAAAGCTTTCAATGAAGTGCA-CAGAAATGGTGTGAC--CA---   1045
                     .||.|||||||..||.||||.|||.|| || ||..||..|.||  ||   
BL03369___flg   1002 TTTTGCGAAAGAGTTTAATGCAGTCCATCA-AAGCGGGTTTACTTCATCG   1050

BSNT_05385___   1046 --AGAGCGGTGAACAAGGCGGAGACTTT-TTTGATTTTACTGGCGGTGAA   1092
                       |||.|.|.|    ||||    |.||| |||||.|||||.||.||.||.
BL03369___flg   1051 GGAGAACCGGG----AGGC----ATTTTCTTTGAATTTACCGGAGGAGAG   1092

BSNT_05385___   1093 ACTGAACCTGCCAAGGGCGCGGCGGGCAAGATCAAAGTGGC---TGACAG   1139
                     .||||.|||||.|||||.||.||.|||||.||||||||.||   |||.|.
BL03369___flg   1093 GCTGAGCCTGCAAAGGGAGCCGCCGGCAAAATCAAAGTAGCCGATGAGAT   1142

BSNT_05385___   1140 CATATTAG-ATTCAAAAGGCGCAAACATTGCTTTCTCACTGACTGGTGCA   1188
                     |||    | ||||||||||||..||..|.||....||.||||.|||||.|
BL03369___flg   1143 CAT----GAATTCAAAAGGCGATAAAGTCGCCGCATCGCTGAATGGTGAA   1188

BSNT_05385___   1189 GCCAACGATAACGCAAATGCTACAAAATTAGCAAATGTTTTAACCGGTAA   1238
                     ||.|.|||.|||||.||.||.|||||..|.||.|||||.||.|||...||
BL03369___flg   1189 GCGAGCGACAACGCCAACGCGACAAATCTCGCTAATGTCTTCACCAAGAA   1238

BSNT_05385___   1239 AAT--AACCATTAACGGT---AAAGAAACTAGTGTTTTAGATTATTATGC   1283
                     |||  ||     |.||||   |||...||.|..||||||||.|||||.||
BL03369___flg   1239 AATTCAA-----ATCGGTGACAAAACGACGACCGTTTTAGACTATTACGC   1283

BSNT_05385___   1284 GGGTCTGATTGGCGAGCTAGGGATCGAAGCTCAAGAGGCTAATCGACTGG   1333
                     .||..|.||.||.||..|.||..|..|||||||.||..|.||..||||||
BL03369___flg   1284 AGGCATCATCGGTGAAATGGGCGTAAAAGCTCAGGAAACAAACAGACTGG   1333

BSNT_05385___   1334 CGTCTAATACAGAAACACAGCTT---AATGATGCTGACATAAACCGTCAG   1380
                     |....|||||||||||   ||||   ||...||||||..|.|||.|.|||
BL03369___flg   1334 CCAAAAATACAGAAAC---GCTTGTAAACACTGCTGAATTGAACAGACAG   1380

BSNT_05385___   1381 CAAATGAGCGCAGTTTCTTTAGACGAAGAAATGACGAATATGATTCAATT   1430
                     ....|.|||||.||.||.|||||||||||||||.||||.|||||.|||||
BL03369___flg   1381 TCTGTTAGCGCCGTATCATTAGACGAAGAAATGTCGAACATGATCCAATT   1430

BSNT_05385___   1431 CCAACACGCATACAATGCAGCTGCAAGAATGGTGACTTTACAAGACGAAT   1480
                     |||.||.||.||.||.||.|||||.||||||.|.||..|.||.||||||.
BL03369___flg   1431 CCAGCATGCTTATAACGCGGCTGCGAGAATGATTACGCTGCAGGACGAAG   1480

BSNT_05385___   1481 TACTTGATAAAGTGATCAACGGTATGGGTGTTGGAGGAAGGTAG   1524
                     |.||.|||||..|.||.|||||.||||||||.|..|||||||||
BL03369___flg   1481 TCCTCGATAAGATTATTAACGGCATGGGTGTCGTGGGAAGGTAG   1524


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