Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05374 and BL03378
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_05374___fliT.1.5803.seq
# -bsequence dna-align/BL03378___fliT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05374___fliT-BL03378___fliT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05374___fliT-BL03378___fliT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05374___fliT
# 2: BL03378___fliT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 374
# Identity: 237/374 (63.4%)
# Similarity: 237/374 (63.4%)
# Gaps: 64/374 (17.1%)
# Score: 680.5
#
#
#=======================================
BSNT_05374___ 1 ATGAATAACATAGATCAACTATACACTGAGACGAAGAGTATGCTGTCACA 50
|||.|.||.||.||.|..||.||||..||.||.||...||||| ||.|.
BL03378___fli 1 ATGGAAAAGATTGAGCTGCTCTACAGCGAAACAAAACATATGC--TCGCT 48
BSNT_05374___ 51 CATACAAAATACG--CCGGAAAGCGATGAGCT--TTTAAAACA---AATT 93
||.|.||||..|| |||||||||||.||||| || || ||||
BL03378___fli 49 CAAATAAAAGGCGCCCCGGAAAGCGACGAGCTGGTT-----CAGGCAATT 93
BSNT_05374___ 94 GAAGACTTTGTGGCT----AAACG----GTCTGAACTGATTCAGGAGATA 135
|||||.||| || ||||| |.|| ||||.|..|||||.
BL03378___fli 94 GAAGATTTT----CTTAAAAAACGCGATGGCT----TGATCCGCGAGATC 135
BSNT_05374___ 136 TCTCTGCCGCTTTCAGA---AGAAGAGCGAAAGCAGATGAAGCTAGTG-C 181
...|.|||.|||||.|| .|||.|||| ||||.||.|||..||| |
BL03378___fli 136 AAGCCGCCTCTTTCTGAGACGGAAAAGCG---GCAGCTGCAGCAGGTGAC 182
BSNT_05374___ 182 TGACATGG-------GATCAGCTTATTGTGAAGGAAATGGAACGACTGAA 224
.||.|||| ||||| ||...|||.||.||.|.|||.|
BL03378___fli 183 GGATATGGAGCCATTGATCA--------TGGCCGAACTGAAAAGGCTGCA 224
BSNT_05374___ 225 GCA----GTCAATCGCAGCAG-AACTTCAGCAGATG-AAAAGAAAACGTG 268
||| ||||| ||||.|| ..||||||..||.| |.||| ||||
BL03378___fli 225 GCAGGCTGTCAA--GCAGGAGCTGCTTCAGGCGAAGCAGAAG----CGTG 268
BSNT_05374___ 269 TGATGCATACGACGTATTTAAACCCTTATAACAACATTACGATTGACGGC 318
..||||||....|.|||.|.||.||.||...||||||.||||||||||||
BL03378___fli 269 CCATGCATCATTCCTATATCAATCCGTACGCCAACATGACGATTGACGGC 318
BSNT_05374___ 319 ACATATTATGACAAGCGTAAATAG 342
|||||||||||||||||.||||||
BL03378___fli 319 ACATATTATGACAAGCGCAAATAG 342
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