Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05366 and BL03385
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_05366___cccB.1.5803.seq
# -bsequence dna-align/BL03385___cccB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05366___cccB-BL03385___cccB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05366___cccB-BL03385___cccB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05366___cccB
# 2: BL03385___cccB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity: 233/354 (65.8%)
# Similarity: 233/354 (65.8%)
# Gaps: 42/354 (11.9%)
# Score: 685.5
#
#
#=======================================
BSNT_05366___ 1 ATGAAATCAAAGTTATCGATACTAATGATTGGATTTGCGCTTTCTGTTCT 50
||||||...|||.|.| .|||| .||.|| .|.||..|||||.||.|
BL03385___ccc 1 ATGAAAATGAAGCTGT--TTACT-CTGTTT---ATGGCTGTTTCTTTTGT 44
BSNT_05366___ 51 GTTGGCTGCCTGCGG-----ATCA-AACGATGCAAAAG--AAGAGAAGAC 92
|.||||||||||||| ||.| |||| |||| |||||||
BL03385___ccc 45 GCTGGCTGCCTGCGGCGGCAATAACAACG-----AAAGCAAAGAGAA--- 86
BSNT_05366___ 93 AGACACTGGCAGCAAGACGGAAGCCACTGCATCTGAAGGGGAAGA-ATTA 141
|.|.||.|||.| |.||||.||||||.|.||.|||||||| |||
BL03385___ccc 87 AAATACAGGCGG------GCAAGCAACTGCAACCGACGGGGAAGAGATT- 129
BSNT_05366___ 142 TATCAGCAAAGCTGCGTAGGCTGCCACGGCAAGGATTTAGAAGGTGTGTC 191
||.|||||||.||||..|||||||||.||.||||||||.|..||.|..||
BL03385___ccc 130 TACCAGCAAAACTGCACAGGCTGCCATGGTAAGGATTTGGCCGGCGGTTC 179
BSNT_05366___ 192 AGGGCCTAATCTCCAAGAGGTCGGAGGCAAATACGATGAACACAAAATTG 241
.|..||.|.|.|..|.||.||.||.|||||.||..|.|||..|.|||||
BL03385___ccc 180 CGCTCCGAGTTTGAAGGAAGTTGGCGGCAAGTATAAGGAAAGCGAAATT- 228
BSNT_05366___ 242 AAAG--CATTATTAAAAACGGCCGCGGCAATATGC----CAAAGGGGCTT 285
||| ||||.|....||||||||||||...|||| ||| .|||
BL03385___ccc 229 -AAGGACATTGTAGTCAACGGCCGCGGCGGAATGCCTGGCAA----TCTT 273
BSNT_05366___ 286 GTAGAGGATAACGAAGCCGCTGTTATTGCCAAATGGCTGTCAGAAAAAAA 335
|||||.||.||.|||||.|..|...|.||.||.|||||.|||||.|||||
BL03385___ccc 274 GTAGACGAAAAAGAAGCTGAAGCGGTCGCGAAGTGGCTTTCAGAGAAAAA 323
BSNT_05366___ 336 GTAA 339
||||
BL03385___ccc 324 GTAA 327
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