Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05348 and BL03395
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_05348___uvrA.1.5803.seq
# -bsequence dna-align/BL03395___uvrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05348___uvrA-BL03395___uvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05348___uvrA-BL03395___uvrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05348___uvrA
# 2: BL03395___uvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2906
# Identity: 2192/2906 (75.4%)
# Similarity: 2192/2906 (75.4%)
# Gaps: 64/2906 ( 2.2%)
# Score: 7995.5
#
#
#=======================================
BSNT_05348___ 1 ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAA 50
|||||.|.|.|.||.||.||||||||.||.||.|||||.|||||||||||
BL03395___uvr 1 ATGGCAACGAAACGAATTGAGGTGAAAGGTGCAAGGGCCCATAACCTGAA 50
BSNT_05348___ 51 AAATATAGATGTGACGATTCCGAGAGATCAGCTTGTCGTTGTCACGGGTT 100
||||||.|||||..|.||||||||.|||||||||||||||.|.||.|||.
BL03395___uvr 51 AAATATCGATGTCTCTATTCCGAGGGATCAGCTTGTCGTTTTGACAGGTC 100
BSNT_05348___ 101 TGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAA 150
|.||.||||||||.|||||.||||||||.||.||.|||||||||||.||.
BL03395___uvr 101 TTTCGGGATCAGGGAAATCATCCCTTGCGTTCGATACGATATATGCAGAG 150
BSNT_05348___ 151 GGACAGAGACGGTATGTCGAGTCGCTGTCTGCCTATGCCCGCCAGTTTTT 200
||.|||.|.||.|||||||||||.||.||.||.|||||||||||||||||
BL03395___uvr 151 GGGCAGCGGCGCTATGTCGAGTCTCTCTCCGCATATGCCCGCCAGTTTTT 200
BSNT_05348___ 201 AGGGCAAATGGATAAGCCGGATGTGGATGCAATTGAGGGGCTCTCTCCCG 250
|||.||.|||||.||.||.||.||.|||||.|||||.||.||.||.||.|
BL03395___uvr 201 AGGACAGATGGACAAACCCGACGTCGATGCGATTGAAGGCCTGTCGCCGG 250
BSNT_05348___ 251 CCATCAGCATTGATCAGAAAACAACGAGCCGCAATCCGAGGTCTACTGTC 300
|.||||||||.||||||||||||||||||||.||.||..||||.||.|||
BL03395___uvr 251 CGATCAGCATCGATCAGAAAACAACGAGCCGGAACCCCCGGTCGACAGTC 300
BSNT_05348___ 301 GGTACGGTAACTGAGATTTATGATTATCTGCGTCTTTTATATGCGAGAGT 350
||.|||||.||.||.||.||.||||||||.||.||..|.|.|||.|||.|
BL03395___uvr 301 GGAACGGTGACGGAAATCTACGATTATCTCCGGCTGCTGTTTGCCAGAAT 350
BSNT_05348___ 351 AGGGAAGCCTCATTGTCCGGAACACGGAATTGAGATTACATCCCAGACCA 400
.||.|||||...|||.||.|..|||||.|||||.|||||.||.||.||.|
BL03395___uvr 351 CGGAAAGCCGGTTTGCCCTGTTCACGGCATTGAAATTACCTCGCAAACGA 400
BSNT_05348___ 401 TCGAGCAAATGGTGGACAGAATTCTGGAATACCCGGAACGGACGAAGCTT 450
||||.||.|||..||||||||||.||||.||.||.||.|||||||||.|.
BL03395___uvr 401 TCGAACAGATGACGGACAGAATTTTGGATTATCCCGAGCGGACGAAGATC 450
BSNT_05348___ 451 CAGGTGCTGGCGCCGATTGTATCGGGCCGAAAAGGCGCTCATGTCAAAGT 500
||||||||.||||||||.||.|||||..|||||||..|.||.||.|||||
BL03395___uvr 451 CAGGTGCTTGCGCCGATCGTCTCGGGAAGAAAAGGATCGCACGTGAAAGT 500
BSNT_05348___ 501 GCTTGAACAGATTAGGAAACAAGGCTATGTCAGAGTCAGAATTGACGGCG 550
|||.|||||.||.||.||||||||||||||.||||||.|.||.|||||||
BL03395___uvr 501 GCTCGAACAAATCAGAAAACAAGGCTATGTGAGAGTCCGGATCGACGGCG 550
BSNT_05348___ 551 AGATGGCTGAGCTTTCCGACGATATCGAATTAGAAAAGAACAAGAAGCAT 600
|.|||...||.||.||.||.||.|||||..|.||||||||.||.||||||
BL03395___uvr 551 AAATGAACGACCTCTCAGAGGACATCGAGCTCGAAAAGAATAAAAAGCAT 600
BSNT_05348___ 601 TCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAGGCGTGGCAGC 650
||.||.||.||.|||.|.|||||.||.|||.|.|||||||||||..|.||
BL03395___uvr 601 TCGATCGAAGTCGTCGTCGACCGCATCGTCATAAAAGAAGGCGTAACCGC 650
BSNT_05348___ 651 CCGGCTGTCAGATTCATTGGAAACGGCGCTTCGTTTAAGTGAAGGACGGG 700
|||.||..||||.||..|.|||||||||||.||..|..|.|||||.||.|
BL03395___uvr 651 CCGTCTCACAGACTCGCTCGAAACGGCGCTCCGCCTCGGCGAAGGCCGTG 700
BSNT_05348___ 701 TTATGATCGATGTCATCGGTGAGGAAGAGCTGATGTTCAGCGAGCATCAT 750
|.||.|||||.||.|||||..|||||||||||.|||||||||||||.|||
BL03395___uvr 701 TGATCATCGACGTGATCGGGCAGGAAGAGCTGCTGTTCAGCGAGCACCAT 750
BSNT_05348___ 751 GCCTGTCCGCACTGCGGATTTTCAATTGGTGAACTTGAGCCGCGTCTGTT 800
|||||||||||||||||.|||||||||||.|||||.||||||.|..||||
BL03395___uvr 751 GCCTGTCCGCACTGCGGTTTTTCAATTGGGGAACTGGAGCCGAGGATGTT 800
BSNT_05348___ 801 TTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTCGGAA 850
|||.||.|||||.||||||||.||.|||||||..||.|||||.|||||..
BL03395___uvr 801 TTCTTTCAACAGCCCGTTCGGCGCATGTCCGAGCTGCGACGGCCTCGGGT 850
BSNT_05348___ 851 TGAAGCTTGAAGTGGATGCCGATCTTGTCATCCCCAATCAAGATTTGTCA 900
..|||||.|||||.||||..||.||.|||||.||.||..|.||..||||.
BL03395___uvr 851 CCAAGCTGGAAGTCGATGTAGAGCTCGTCATTCCAAACGATGAGCTGTCT 900
BSNT_05348___ 901 TTGAAGGAGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACAATATTA 950
.|.||||||||||||.|.||.||||||..||||...|||||.||||||||
BL03395___uvr 901 CTAAAGGAGAATGCGATTGCACCTTGGGAACCGCAGAGCTCCCAATATTA 950
BSNT_05348___ 951 TCCTCAGCTGCTTGAGGCAGCCTGCACCCACTACGGGATTGATATGGATG 1000
|||..||||||||||.||.|..||||.||||||.||.||.|||||||||.
BL03395___uvr 951 TCCGAAGCTGCTTGAAGCGGTATGCAGCCACTATGGAATCGATATGGATA 1000
BSNT_05348___ 1001 TGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGTGCTGTACGGC 1050
|.|||||||.|||..||||||||||.||.||.||.|||.|.||.||||||
BL03395___uvr 1001 TTCCGGTCAGAGACCTGCCGAAGCACCACCTTGAGAAAATCCTCTACGGC 1050
BSNT_05348___ 1051 AGCGGAGATGACCTGATTTATTTCAGATATGAAAATGATTTTGGACAAAT 1100
|||||||..||.|.|||||||||||||||||||||.||.||.||||||.|
BL03395___uvr 1051 AGCGGAGGCGAGCAGATTTATTTCAGATATGAAAACGACTTCGGACAAGT 1100
BSNT_05348___ 1101 CCGTGAAGGTGAA----ATTCAATTTGAAGGCGTATTGCGCAACATTGAA 1146
|||.||| || |||.|.||.||||||||..|.|||||.||.|||
BL03395___uvr 1101 CCGGGAA----AACTACATTGAGTTCGAAGGCGTCATCCGCAATATCGAA 1146
BSNT_05348___ 1147 AGACGCTATAAGGAGACAGGCTCTGATTTCATCCGTGAGCAGATGGAGCA 1196
||.||||||||.||.||..||||.||||...|.|||||.|.||||||..|
BL03395___uvr 1147 AGGCGCTATAAAGAAACCAGCTCGGATTATGTTCGTGAACTGATGGAAAA 1196
BSNT_05348___ 1197 GTATATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAAGA 1246
.||||||.||.|..||.|.||.||..|.|||||||||||.||..|.||.|
BL03395___uvr 1197 ATATATGGCTAATCAGCCGTGCCCTTCATGCAAAGGCTACCGTCTGAAAA 1246
BSNT_05348___ 1247 AAGAGGCGCTTGCCGTACTGATTGACGGCCGCCACATCGGAAAAATTACC 1296
|.||..|.||.|||||.||||||.||||||..||||||||.||.||.|||
BL03395___uvr 1247 AGGAATCCCTCGCCGTGCTGATTAACGGCCTTCACATCGGTAAGATAACC 1296
BSNT_05348___ 1297 GAGCTGTCTGTCGCCGACGCACTTGCCTTCTT---TAAAAACCTTACCCT 1343
||..||||.||.||..||||.|||...||.|| |.|| |||...||
BL03395___uvr 1297 GAAATGTCGGTAGCTAACGCCCTTCAATTTTTCCGTGAA---CTTGATCT 1343
BSNT_05348___ 1344 TTCTGAGAAGGATATGCAGATCGCCAATTTGATTTTGCGCGAAATTGTGG 1393
|||.||.||.||.|||.||||||||||..|.||||||||.||.||||..|
BL03395___uvr 1344 TTCAGAAAAAGACATGAAGATCGCCAACCTCATTTTGCGGGAGATTGAAG 1393
BSNT_05348___ 1394 AGCGCTTAA-GCT----TTC-TGGACAAAGTCGGCCTCGATTACCTGACA 1437
| || ||| ||| ||.||||.|||||.||.||.||..||||.
BL03395___uvr 1394 A------AAGGCTCGGATTCTTGAACAATGTCGGGCTTGACTATTTGACG 1437
BSNT_05348___ 1438 TTGAGCAGGGCAGCGGGTACATTGTCCGGGGGAGAGGCGCAGCGCATCAG 1487
.|.|||.|.|||||.||.||..||||.||||||||.||||||||.|||||
BL03395___uvr 1438 CTCAGCCGCGCAGCCGGCACTCTGTCGGGGGGAGAAGCGCAGCGGATCAG 1487
BSNT_05348___ 1488 GCTGGCGACTCAAATTGGCTC--GCGCTTATCCGGTGTGCTTTATATTTT 1535
|||.||.||.|||||.||||| | |||.| |||||||.|||||.||..|
BL03395___uvr 1488 GCTTGCAACGCAAATCGGCTCAAG-GCTGA-CCGGTGTCCTTTACATCCT 1535
BSNT_05348___ 1536 AGATGAGCCGTCTATCGGTCTGCATCAGCGTGATAACGACCGCTTGA-TC 1584
.|||||||||||.||||||||.|||||.||.||||||||||||.||| |.
BL03395___uvr 1536 TGATGAGCCGTCAATCGGTCTTCATCAACGCGATAACGACCGCCTGATTG 1585
BSNT_05348___ 1585 AG-CGCTCTGAAAAATATGAGAGACCTCGGGAACACGCTGATTGTTGTCG 1633
|| ||||| |||||.|||||.||..||||.|||||..||||.||.||||
BL03395___uvr 1586 AGACGCTC--AAAAACATGAGGGATATCGGAAACACATTGATCGTCGTCG 1633
BSNT_05348___ 1634 AACATGATGAGGACACGATGATGGCAGCAGATTATTTAATAGATATTGGA 1683
|.|||||.|||||.||.|||.|.||.||.|||||||||||.|||||.||.
BL03395___uvr 1634 AGCATGACGAGGATACAATGCTTGCCGCCGATTATTTAATCGATATCGGG 1683
BSNT_05348___ 1684 CCGGGAGCCGGTATTCACGGCGGACAGGTGATATCTGCGGGTACGCCGGA 1733
||.||.||.|||.|.|||||.|||.|.||.||.||.||.||.||||||||
BL03395___uvr 1684 CCCGGCGCGGGTGTACACGGGGGAGAAGTAATCTCCGCCGGAACGCCGGA 1733
BSNT_05348___ 1734 AGAAGTGATG---GAAGATCCAAACTCATTAAC-GGGCAGCTATTTATCA 1779
|||||||||| ||.||| |||.||| |.|| ||||| .|||.|.|||
BL03395___uvr 1734 AGAAGTGATGAACGATGAT-CAATCTC--TGACAGGGCA-ATATCTTTCA 1779
BSNT_05348___ 1780 GGGGAAAAGTTTATCCCATTGCCTCCTGAAAGAAGAAAGCCGGACGGACG 1829
|||.||||.||.||.||..|.|||.|.||.|||||||||||.|||...||
BL03395___uvr 1780 GGGAAAAAATTCATTCCTCTTCCTGCCGAGAGAAGAAAGCCTGACAACCG 1829
BSNT_05348___ 1830 TTACATTGAAATTAAAGGTGCTTCAGAAAACAACTTGAAAAAAGTGAATG 1879
.|..||.||..|.|||||.||....|||||||||||||||||.|| |.
BL03395___uvr 1830 CTTTATCGAGGTAAAAGGGGCAAAGGAAAACAACTTGAAAAATGT---TT 1876
BSNT_05348___ 1880 CC---AAGTTCCCGCTTGGGACGTTTACAGCAGTTACAGGTGTTTCCGGT 1926
|| ||.||.|||||.||...|||.|||||.|||||.||.||.||.||.
BL03395___uvr 1877 CCGTGAAATTTCCGCTCGGCGTGTTCACAGCTGTTACCGGGGTATCGGGA 1926
BSNT_05348___ 1927 TCAGGGAAGAGTACACTCGTTAATGAAATTTTGCATAAGGCGCTGGCGCA 1976
||||||||.||.||.|||||||||||||||.|.||.||..|||||||.||
BL03395___uvr 1927 TCAGGGAAAAGCACGCTCGTTAATGAAATTCTCCACAAAACGCTGGCTCA 1976
BSNT_05348___ 1977 AAAGCTTCATAAAGCGAAAGCGAAGCCCGGCAGCCAT--AAAGAGATTAA 2024
.|||||.|||...||.||..|||| .||||.|| .|| |||||.||.||
BL03395___uvr 1977 GAAGCTGCATCGGGCTAAGACGAA-ACCGGGAG-AATACAAAGAAATAAA 2024
BSNT_05348___ 2025 AGGTTTGGATCATTTAGACAAAGTCATTGACATTGACCAGGCGCCAATTG 2074
|||..|.||.||..|.||.|||||.||.||.|||||||||.|.||.||.|
BL03395___uvr 2025 AGGAATCGAGCACCTCGATAAAGTGATCGATATTGACCAGTCTCCGATCG 2074
BSNT_05348___ 2075 GAAGAACGCCGAGATCCAACCCTGCGACATACACCGGTGTATTTGATGAC 2124
|..|.||||||||.||.||.||.||.|||||.|||||.||.||.||||||
BL03395___uvr 2075 GCCGGACGCCGAGGTCAAATCCGGCCACATATACCGGCGTGTTCGATGAC 2124
BSNT_05348___ 2125 ATTCGTGATGTATTCGCGCAGACAAATGAAGCGAAGGTCCGCGGCTATAA 2174
||.||.||.||.||.||.|||||.|||||||||||.|||.|.||.||.||
BL03395___uvr 2125 ATCCGCGACGTGTTTGCCCAGACGAATGAAGCGAAAGTCAGAGGATACAA 2174
BSNT_05348___ 2175 AAAAGGCCGTTTCAGCTTCAACGTGAAGGGCGGACGATGTGAAGCCTGCC 2224
.|||||.||.||||||||.|||||.||.||||||||.|||||.||||||.
BL03395___uvr 2175 GAAAGGGCGCTTCAGCTTTAACGTCAAAGGCGGACGCTGTGAGGCCTGCA 2224
BSNT_05348___ 2225 GCGGAGACGGGATTATTAAAATTGAAATGCACTTCCTTCCTGACGTATAC 2274
..||.|||||.||.||||||||.||.|||||||||||.||.||.||||||
BL03395___uvr 2225 AAGGCGACGGAATCATTAAAATCGAGATGCACTTCCTGCCCGATGTATAC 2274
BSNT_05348___ 2275 GTTCCATGCGAGGTGTGTCACGGCAAACGCTATAACCGTGAAACGCTTGA 2324
|||||.||.|||||.||.|||||.||..|.||.|||||||||||||||.|
BL03395___uvr 2275 GTTCCTTGTGAGGTTTGCCACGGAAAGAGATACAACCGTGAAACGCTTCA 2324
BSNT_05348___ 2325 AGTGACGTACAAAGGAAAAAGCATCTCTGATGTGCTTGATATGACGGTTG 2374
.||.|||||||||||.||||..||||||||.||||||||.||||||||.|
BL03395___uvr 2325 GGTTACGTACAAAGGCAAAAATATCTCTGACGTGCTTGAGATGACGGTCG 2374
BSNT_05348___ 2375 AAGATGCTCTTCCTTTCTTTGAAAATATCCCGAAAATCAAACGCAAGCTC 2424
|..||||..|||..||.|||||.||.||||||||||||||.||||||||.
BL03395___uvr 2375 AGAATGCCGTTCAATTTTTTGAGAACATCCCGAAAATCAAGCGCAAGCTG 2424
BSNT_05348___ 2425 CAAACCCTTTATGATGTTGGTTTAGGTTATATTACGCTCGGCCAGCCGGC 2474
||.|||||.||||||||.|||.|.||.||||||||||||||.||||||||
BL03395___uvr 2425 CAGACCCTCTATGATGTCGGTCTTGGCTATATTACGCTCGGACAGCCGGC 2474
BSNT_05348___ 2475 GACGAC-CTTGTCAGGCGGAGAAGCGCAGCGCGTGAAGCTCGCGTCAGAG 2523
.||.|| ||| ||.||.||||||||||||||.||.||..|.||.||.||.
BL03395___uvr 2475 TACAACGCTT-TCCGGGGGAGAAGCGCAGCGGGTCAAATTGGCATCTGAA 2523
BSNT_05348___ 2524 CTGCACAAACGCTCGACCGGACGCACGCTCTACATTTTAGATGAGCCGAC 2573
||.|||...||.||.||.|||.|..|.||.||.|||||.||.||||||||
BL03395___uvr 2524 CTTCACCGCCGTTCAACGGGAAGATCCCTTTATATTTTGGACGAGCCGAC 2573
BSNT_05348___ 2574 GACAGGTTTGCATGTCGACGATATCGCCAGGCTTCTTGTCGTGCTGCAAC 2623
||||||..||||.|||||.||||||||.||||||.|.|.|||.|||||.|
BL03395___uvr 2574 GACAGGACTGCACGTCGATGATATCGCAAGGCTTTTGGCCGTTCTGCAGC 2623
BSNT_05348___ 2624 GGTTGGTAGACAACGGAGACACTGTACTGGTTATTGAGCACAACCTTGAT 2673
|..||||.|||||.|||||.||.||.||.||.||.||.|||||.||.|||
BL03395___uvr 2624 GCCTGGTCGACAATGGAGATACAGTGCTTGTAATCGAACACAATCTAGAT 2673
BSNT_05348___ 2674 ATCATTAAGACGGCCGATTACATTG-TGGATTTGGGCCCGGAAGGCGGAG 2722
||.||.||..||||.||||| .||| |.||.|||||.||.||||||||||
BL03395___uvr 2674 ATTATAAAAGCGGCTGATTA-TTTGATCGACTTGGGTCCTGAAGGCGGAG 2722
BSNT_05348___ 2723 CCGGGGGCGGAACCATTGTCGCGTCTGGAACGCCTGAGGAAATCACTG-A 2771
.|||.||.||||..||.||.||..|.|||.|.||.||.|||.|| .|| |
BL03395___uvr 2723 ACGGCGGGGGAATGATCGTGGCTGCCGGACCTCCCGAAGAAGTC-GTGAA 2771
BSNT_05348___ 2772 AGTTGAAGAATCGTATACAGGCCGTTATTTGAAGCCTGTTATCGAACGTG 2821
|||.||||..||.|||||.|||||||||||.||.||..|.||.|||||.|
BL03395___uvr 2772 AGTCGAAGGGTCATATACCGGCCGTTATTTAAAACCGATCATTGAACGCG 2821
BSNT_05348___ 2822 ACAAAGCAC-GCATGA--AATCGCTCTTGAAAGCGAAAGAAACAGCTACA 2868
||||| .|| |.|||| ||.|| .||| .|||..||||||.|.|..|.|
BL03395___uvr 2822 ACAAA-AACAGAATGAAGAAGCG-GCTT-CAAGAAAAAGAAGCTGTCAGA 2868
BSNT_05348___ 2869 TCTTAA 2874
.|.|||
BL03395___uvr 2869 CCGTAA 2874
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