Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05324 and BL03404
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_05324___ppaX.1.5803.seq
# -bsequence dna-align/BL03404___hprP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05324___ppaX-BL03404___hprP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05324___ppaX-BL03404___hprP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05324___ppaX
# 2: BL03404___hprP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity: 465/675 (68.9%)
# Similarity: 465/675 (68.9%)
# Gaps: 51/675 ( 7.6%)
# Score: 1533.5
#
#
#=======================================
BSNT_05324___ 1 ATGAGTGACAAACAAGTAACGACGATTCTGTTTGATTTAGACGGAACGCT 50
|||| ||||.|..|||.||.|.||||||||.||.||||||||
BL03404___hpr 1 ATGA---------AAGTTAATACGGTTTTATTTGATTTGGATGGAACGCT 41
BSNT_05324___ 51 TATTAATACGAATGAATTAATTATCGCGTCCTTTTTGCATACACTGGAGC 100
.||.|||||.|||||..|.||||||||.||.|||||||||||.||.||.|
BL03404___hpr 42 CATCAATACAAATGAGCTGATTATCGCCTCATTTTTGCATACGCTCGATC 91
BSNT_05324___ 101 ATTATTATCCGAGCAAG-TATAAACGAGAAGATGTCCTTGCGTTTATCGG 149
|||||...||| |.|.| ||||||||.||.|||||.|||||.||.|||||
BL03404___hpr 92 ATTATGCACCG-GGACGCTATAAACGGGAGGATGTTCTTGCTTTCATCGG 140
BSNT_05324___ 150 GCCGTCTCTTTTTGAAACGTTCTC-----TTCGATGGACCCTGATAAATG 194
.||.||.||||.|||||||||||| |||.|..| ||| ||.|
BL03404___hpr 141 ACCTTCCCTTTATGAAACGTTCTCAAGCATTCAAAAG-----GAT-AAGG 184
BSNT_05324___ 195 C-GAGGATATGATCGCTATGTACAGAGCGTAC----AATCATGACATGCA 239
| ||.||.||||||.|.|||||| ||.|| ||||||.|.|||||
BL03404___hpr 185 CTGAAGAAATGATCACCATGTAC----CGGACATTTAATCATCAGATGCA 230
BSNT_05324___ 240 TGATTCACTCGTGACTGAATATGAAACGGTATATGAGAC-CCTGGATGCA 288
||||..|||.||.||.||.|||||.|||||.||.||||| |.||.|.||.
BL03404___hpr 231 TGATGAACTGGTAACCGAGTATGAGACGGTTTACGAGACGCTTGAACGCC 280
BSNT_05324___ 289 TT----AAAAAAAGCCGGCTTTACATTAGGAATTGTGACAACAAAATTAA 334
|| ||.|| ||||.||...|.||.||.||.||.|||||..|..
BL03404___hpr 281 TTGCGGAAGAA-----GGCTATAAGCTCGGCATCGTCACGACAAAGCTGC 325
BSNT_05324___ 335 GAGATACTGTCAATATGGGCCTCAAGCTCACGGGAATCGGCGAATTCTTT 384
|.||.||.||||..|||||.||.||.||.||.||..|.|..|..||.||.
BL03404___hpr 326 GGGACACCGTCATCATGGGGCTTAAACTGACTGGGCTTGATGCCTTTTTC 375
BSNT_05324___ 385 GAAACAGTTGTCACCCTTGATGATGTGACAAATG--CAAAGCCTGATCCC 432
||.||.|||||.||.||.|||||.|| |.|..| |.||||||||.|||
BL03404___hpr 376 GAGACGGTTGTGACGCTGGATGACGT--CGAGCGGCCGAAGCCTGACCCC 423
BSNT_05324___ 433 GAGCCTGTGCTGTTAGCGCTGAAACAGTTAGGAAGCAAGCCCGAGGAAGC 482
||||||||..||.|.||.||.....||.|.||.|||...||.||.|||||
BL03404___hpr 424 GAGCCTGTTTTGCTCGCCCTTTCCAAGCTTGGCAGCCGTCCGGAAGAAGC 473
BSNT_05324___ 483 CATTATGGTCGGAGATAATTACCACGATGTGCTGGCAGGCAAAAACGCCG 532
|||||||.||||.|||||||||||||||.|..|.||.||.||.||.||.|
BL03404___hpr 474 CATTATGATCGGTGATAATTACCACGATATTTTAGCCGGGAAGAATGCTG 523
BSNT_05324___ 533 GTACAAAAACGGCAGGAGTCGCATGGACGATTAAAGGGCCGGAAATGCTG 582
|.||.|||||.|||||.||.||||||||||||||.||....||||..|||
BL03404___hpr 524 GAACGAAAACAGCAGGCGTTGCATGGACGATTAAGGGAGAAGAAAGCCTG 573
BSNT_05324___ 583 GCGAAGCATGAGCCGGATTTTATGCTTGAGAAAATGAGTGATCTATTACA 632
||.||.||.|||||.||||||||||||.||.|||||||.||.||..|.||
BL03404___hpr 574 GCCAAACACGAGCCTGATTTTATGCTTCAGCAAATGAGCGACCTCCTTCA 623
BSNT_05324___ 633 AATCGTTGGAGTGAAGTAA------ 651
.||..||||.|||.||.||
BL03404___hpr 624 CATTCTTGGGGTGGAGAAAGTTTGA 648
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