Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05323 and BL03405
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_05323.1.5803.seq
# -bsequence dna-align/BL03405___yvoF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05323-BL03405___yvoF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05323-BL03405___yvoF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05323
# 2: BL03405___yvoF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 528
# Identity: 243/528 (46.0%)
# Similarity: 243/528 (46.0%)
# Gaps: 225/528 (42.6%)
# Score: 874.5
#
#
#=======================================
BSNT_05323 1 GTGAGAAAAACAGATCGTCATCCGGTCTCGGGGGCCAACTCACTGTGGCA 50
.||||||||||..|.||..|.|||||.||.||.|||||.||..|.|||||
BL03405___yvo 1 TTGAGAAAAACGAAGCGCTACCCGGTGTCCGGCGCCAATTCCTTATGGCA 50
BSNT_05323 51 TGTCTATCAAACGGTACC-TTTTTTAAAGGTCGTCAAAAATTTCATTGTC 99
..|||||||.|||||.|| ||||||||| ||.||||||||.||.||||||
BL03405___yvo 51 CATCTATCAGACGGTTCCGTTTTTTAAA-GTAGTCAAAAACTTTATTGTC 99
BSNT_05323 100 ATTCAAATTGCGAGATATACGCCGTTTATAGGGATGAAAAACTGGCTGTA 149
|||||....|||.|.|||||||||.||.|.||.||||||||||||.||||
BL03405___yvo 100 ATTCAGGCGGCGCGCTATACGCCGATTCTTGGAATGAAAAACTGGATGTA 149
BSNT_05323 150 CCGTACATTTCTGCGGATGAAGGTTGGAAATCAGACA-------TCCTTT 192
|||.||.|||.||||||||| |||||.||.| ||.|||
BL03405___yvo 150 CCGGACGTTTTTGCGGATGA-------AAATCGGAGAGAAATGCTCGTTT 192
BSNT_05323 193 GCCCTCATGGTGATGCCAGATATCATGTTTCCGGAAAAGATCTCAGTCGG 242
||..|.|||||.|||||.||||||||||||||.|||||.|||||||||||
BL03405___yvo 193 GCTTTAATGGTCATGCCGGATATCATGTTTCCCGAAAAAATCTCAGTCGG 242
BSNT_05323 243 AACAAATACAATCATCGGGTACAATACGACCATTCTGGCCCATGAGTATT 292
...|||.||..|.|||||.||.||||||||||||.||||.||.|||||||
BL03405___yvo 243 GCGAAACACCGTAATCGGCTATAATACGACCATTTTGGCGCACGAGTATT 292
BSNT_05323 293 ------------------CCGG----------ATCGGC----ACAGTTCT 310
.||| |||||| | |||..|
BL03405___yvo 293 TAATAAAAGAATATCGGCTCGGTGAGGTGATCATCGGCGATGA-AGTCAT 341
BSNT_05323 311 GA------------------------------------------------ 312
||
BL03405___yvo 342 GATCGGAGCCAATACGACGATCCTCCCGGGCGTCGAGATCGGAGACGGCG 391
BSNT_05323 312 -------------------------------------------------- 312
BL03405___yvo 392 CCGTCATTTCCGCCGGTACGCTCGTTCATAAAGATGTGCCCCCGGGCGCT 441
BSNT_05323 312 -------------------------------------------------- 312
BL03405___yvo 442 TTTGTCGGCGGCAATCCGATGCGGCTGATCTATACAAAAGAAGAAATGGA 491
BSNT_05323 312 ---------------------------- 312
BL03405___yvo 492 AAAAAGATTGGAGACCCCCGCTGAATAA 519
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