Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05314 and BL03406
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_05314___hisZ.1.5803.seq
# -bsequence dna-align/BL03406___hisZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05314___hisZ-BL03406___hisZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05314___hisZ-BL03406___hisZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05314___hisZ
# 2: BL03406___hisZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity: 872/1221 (71.4%)
# Similarity: 872/1221 (71.4%)
# Gaps: 90/1221 ( 7.4%)
# Score: 2994.0
#
#
#=======================================
BSNT_05314___ 1 ATGTTTATGTTTGAAAAACCGCACGGCATGAGAGATACACTGCCCGGTTT 50
|||||||||||||||||||||||.||||||.|.|||||.||||| |
BL03406___his 1 ATGTTTATGTTTGAAAAACCGCATGGCATGCGGGATACGCTGCC-----T 45
BSNT_05314___ 51 A-----TACGAAACGAAAAAAAAGGTGAGACGATCGTTAACCGATTTGAT 95
| ||||||||.||.|||||||||.|....||.|||||.||..||||
BL03406___his 46 ATGCTTTACGAAACAAAGAAAAAGGTGCGCTCTTCATTAACAGAGGTGAT 95
BSNT_05314___ 96 TGATAAATGGGGATATCAATTTATGGAAACGCCGACACTGGAGTTTTACG 145
.|.|...|||||.|||||.||.|||||.|||||..|.||.||.|||||.|
BL03406___his 96 GGCTTTGTGGGGGTATCAGTTCATGGAGACGCCTGCCCTTGAATTTTATG 145
BSNT_05314___ 146 ATACCGTTGGCGTCCAGTCAGC--AATTGAAGAGCAGCAGCTGTTTAAGC 193
||||.||.||.||.|||||.|| .|||| ||.||||||.|||||||.|
BL03406___his 146 ATACGGTCGGTGTGCAGTCGGCCATATTG--GATCAGCAGTTGTTTAAAC 193
BSNT_05314___ 194 TACTTGATCAGGACGGCAAGACATTGGTGCTTCGCCCGGATATGACGGGG 243
|.|||||||||||.||..||||..|.|||.|..|.||.||||||||||..
BL03406___his 194 TCCTTGATCAGGAGGGGCAGACGCTCGTGTTAAGGCCTGATATGACGGCT 243
BSNT_05314___ 244 CCGATTGCAAGGGTAGCGGCATCGAAGCTTCTGAAACACGGTCATCCGCT 293
||.||.||.|||||.|||||.||.|||||||..|||.|||.|||||||||
BL03406___his 244 CCAATCGCCAGGGTGGCGGCCTCAAAGCTTCATAAAGACGATCATCCGCT 293
BSNT_05314___ 294 AAGAGTCGGCTATGCGGCAAATGTATTCAGGGCTCAGGAGCGTGAAGGCG 343
.|||||.||||||||.||||||||.|||.||||.||||||||||||||.|
BL03406___his 294 CAGAGTAGGCTATGCTGCAAATGTGTTCCGGGCACAGGAGCGTGAAGGAG 343
BSNT_05314___ 344 GACGTCCGGCTGAGTTCGAGCAGGTCGGAGTGGAGTTAATCGGTGACGGC 393
||||.||.||.||.||.|||||.|||||.||.||..|.|||||.||.||.
BL03406___his 344 GACGCCCCGCCGAATTTGAGCAAGTCGGCGTTGAACTGATCGGCGATGGA 393
BSNT_05314___ 394 ACGACGAGCGCGGATGCGGAGGTCATTGCTTTAG-TCGTCGGGGCAT--- 439
.||||.|||||.||.||.||.||.||||| | |||| |||
BL03406___his 394 TCGACAAGCGCTGACGCAGAAGTGATTGC----GCTCGT-----CATTTT 434
BSNT_05314___ 440 -----TAAAAAACGCTGGGCTGGCATCCTTTAAAATTGCCATCGGCCATG 484
|.|||||.||.||.|||.|.||.||||||||..|.||||||||||
BL03406___his 435 TTCGCTTAAAAATGCCGGCCTGACTTCATTTAAAATCTCGATCGGCCATG 484
BSNT_05314___ 485 CCGGCATTGCGGATGCTTTGTTTGTTGAGGTGCTCGGAAACGTTGAACGA 534
.|||.|||...||.||.||||||||.||.||..|.||.||.|..|||.|.
BL03406___his 485 TCGGTATTTTAGACGCCTTGTTTGTGGAAGTTTTAGGGAATGAAGAAAGG 534
BSNT_05314___ 535 GCTGATGTGCTGCGGAGGTTCTTATATGAAAAGAACTACGTCGGCTACAG 584
|||.||||.||||||.|.|..|||||.|||||||||||.||||||||..|
BL03406___his 535 GCTCATGTCCTGCGGCGCTATTTATACGAAAAGAACTATGTCGGCTATCG 584
BSNT_05314___ 585 AGAGCATGTCAAGTCTCTCCCGCTTTCCTCCATTGATAAAAGCAGGCTGC 634
.||||||||.||.||.|||....|.|||||.|||||||||||||||||||
BL03406___his 585 GGAGCATGTAAAATCCCTCAATTTATCCTCAATTGATAAAAGCAGGCTGC 634
BSNT_05314___ 635 TTGAGCTCCTTGAACTGCGGGGCGGTATAGAAGTATGCGGACGTGCCGAA 684
|.|||||..|.||.|||.||||||||||.||| ||||||.|.|
BL03406___his 635 TGGAGCTTTTGGAGCTGAGGGGCGGTATTGAA--------ACGTGCAGCA 676
BSNT_05314___ 685 G--------AAATCGTCGATTCTGCGCAAGGAAAAAGCGTGGTTGATGAG 726
| ..|||||||||||||...||||||||.|.|.||||...||.
BL03406___his 677 GGGCGGCATCCATCGTCGATTCTGAAAAAGGAAAACGTGCGGTTTTAGAA 726
BSNT_05314___ 727 C-TGAAGGCGCTGTGGGACATTCTTGAGGATTACGGATGTACGGA--AAA 773
| |||| .||||.|||||.|..||.|..|||||.||.||.||.|| |.|
BL03406___his 727 CTTGAA-ACGCTATGGGAGACGCTCGGCGATTATGGTTGCACAGACGACA 775
BSNT_05314___ 774 TGTCCGCCTGGATCTGAATATGGTCAGCCACATGAGCTATTACACAGGGA 823
| |..| ||.|||.|....|||||||||||.||||||||.||.||.||..
BL03406___his 776 T-TAAG-CTCGATTTAGGCATGGTCAGCCATATGAGCTACTATACCGGTG 823
BSNT_05314___ 824 TTTTATTTGAAGTGTACGCCGAGAATGTCGGTTTTGTCATTGGAAGCGGC 873
||||.||||||.|.||.||.||.||.|||||.|||...||.||||.||||
BL03406___his 824 TTTTGTTTGAAATCTATGCTGAAAACGTCGGCTTTCCGATCGGAAACGGC 873
BSNT_05314___ 874 GGCCGTTACAACAAGCTGCTGGGCCATTTTGATTCACCTGCACCGGCAAC 923
|||.|.||..|..||||.||.||||..||.||.|||||.|||||||||||
BL03406___his 874 GGCAGATATGATCAGCTTCTCGGCCGCTTCGACTCACCCGCACCGGCAAC 923
BSNT_05314___ 924 AGGCTTCGGGCTTC-GGATCGACCGGCTGATTGAAGCCCTTCATATGAA- 971
.||.||| |||.|| |||..|||.|||||.|.|||| ||| ||||
BL03406___his 924 CGGTTTC-GGCATCAGGACTGACAGGCTGCTGGAAG-----CAT-TGAAG 966
BSNT_05314___ 972 -----AGAAGAACCATGTGATATAGA-CGCT---GTTATTTTCAGCAAAG 1012
.|||||||.| || |.||| ||.| ||.||.|||||||.||
BL03406___his 967 CCGGCGGAAGAACAA---GA-AAAGATCGATGTCGTCATCTTCAGCACAG 1012
BSNT_05314___ 1013 AGCAGCGGGCGCAA-----GCTATC-GCTTATG-CGAATGAAGAACGCAT 1055
|.|||.| || ||.||| |.|| || |||| ||||||||.|.
BL03406___his 1013 AACAGAG-----AAAAGAGGCAATCAGATT-TGCCGAA-GAAGAACGAAG 1055
BSNT_05314___ 1056 GAAAGGGAACAAAGTAGTTCTTCAAGATTTATCGGGAATAGAAAATATCG 1105
.|||||.||.|||||.||..|.||.||.|||.|||||||.|.|.||||.|
BL03406___his 1056 AAAAGGCAAAAAAGTCGTCATGCAGGACTTAGCGGGAATCGGAGATATTG 1105
BSNT_05314___ 1106 ACCAGATGACAAAATCTTTTGCAAACGTCACTTATTTTATCGGTGCCAGA 1155
|.||.||||||||.||||||..||||||.||.|||||||||||.||||||
BL03406___his 1106 ATCAAATGACAAAGTCTTTTCAAAACGTGACCTATTTTATCGGAGCCAGA 1155
BSNT_05314___ 1156 AAGGAAGAGCAAAATGGGTAA 1176
|||||||||.|..||||||||
BL03406___his 1156 AAGGAAGAGAAGCATGGGTAA 1176
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