Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05311 and BL03408
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_05311___hisD.1.5803.seq
# -bsequence dna-align/BL03408___hisD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05311___hisD-BL03408___hisD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05311___hisD-BL03408___hisD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05311___hisD
# 2: BL03408___hisD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1342
# Identity: 949/1342 (70.7%)
# Similarity: 949/1342 (70.7%)
# Gaps: 119/1342 ( 8.9%)
# Score: 3133.5
#
#
#=======================================
BSNT_05311___ 1 ATGAAGATCAAAACCATCAGCGGAGCGGAA-----CGGCTTTCTCTCAAG 45
||||||||||||.||||||||||| || ||| ||||.||.||.
BL03408___his 1 ATGAAGATCAAATCCATCAGCGGA----AATACGTCGG-TTTCACTAAAA 45
BSNT_05311___ 46 CGTTCCATCGATGCTGGAACGGAAGAGCAAAGAAAGACGGTCCGGTCCAT 95
||.||.||.||.||.||||||||.||.||||||||..|.|||||...|||
BL03408___his 46 CGCTCTATTGACGCCGGAACGGAGGAACAAAGAAAAGCAGTCCGCGGCAT 95
BSNT_05311___ 96 TATTGAAGATGTTAAAGCAAACGGTGAT-CAGGCGGTT--CGCAGCTACA 142
|||.|||||.||.|||...|||||..|| || ||.||| ||||...|||
BL03408___his 96 TATCGAAGAAGTGAAAAAGAACGGAAATGCA-GCTGTTTCCGCATTCACA 144
BSNT_05311___ 143 CGGCGAAATTTGACGGCATCGAAATAGACAGCCCGCT----GGTCACAAA 188
.|.| |||||||||| |.||.|...| |||.||| .||..|..|
BL03408___his 145 AGAC--AATTTGACGG-AGCGGATGTG---GCCGGCTTTCGCGTTTCCGA 188
BSNT_05311___ 189 AGAAGAATTTGAGGAGGCATACACCTCACTGGATTCACGTCTTCTTCAGG 238
|||.|||.|..||||.|||||||.|.|.||.||...||||..|||..||.
BL03408___his 189 AGAGGAAATCAAGGAAGCATACAGCGCGCTCGAAGAACGTGATCTCGAGA 238
BSNT_05311___ 239 TGATT-AGGCAGGCAATCGAAAATATTAGGGAATATCACGAAAGACAGCT 287
|.||| |||| |||.||....||.||||..||||||||.||..|.|||||
BL03408___his 239 TTATTCAGGC-GGCGATTTTCAACATTAAAGAATATCATGAGCGTCAGCT 287
BSNT_05311___ 288 -GCAATCCTCCTGGTTTTATCACAGAAAGGACGGCACAATGCTGGGGCAG 336
|||| |.||.||||||||.|||.|.||||||||.||.|||||.||.||.
BL03408___his 288 CGCAA-CATCTTGGTTTTACCACCGCAAGGACGGAACGATGCTCGGCCAA 336
BSNT_05311___ 337 AAAGTGACGGCGCTGGATTCCGCCGGTGTATATGTGCCGGGGGGAACGGC 386
|||.|.|||.||||.|||||.||.||.||.||||||||.||.||||||||
BL03408___his 337 AAAATTACGCCGCTTGATTCAGCGGGGGTGTATGTGCCCGGCGGAACGGC 386
BSNT_05311___ 387 CGCATATCCTTCATCTGTTTTGATGAATGTGATTCCGGCGCTTGTAGCGG 436
.||.||.||.|||||.|||.||||||||||.||||||||||||||.||.|
BL03408___his 387 TGCTTACCCATCATCCGTTCTGATGAATGTCATTCCGGCGCTTGTTGCAG 436
BSNT_05311___ 437 GCGTTGAAAGAATCGTTCTCGTCACGCCTCCGGGAAAAGACGGTCTGCTG 486
||||.||..|.||.||.||.|.|.|.||||||||||||||||||....||
BL03408___his 437 GCGTCGACCGCATTGTCCTTGCCTCACCTCCGGGAAAAGACGGTAAATTG 486
BSNT_05311___ 487 TCTCCTGGAGTTTTGGTTGCTGCAGCCGAGCTGGGCATAAAAGACATTTA 536
||..|.|||||..|||.||||||.||.|||||.|||.|.|.|||.|||||
BL03408___his 487 TCGGCGGGAGTGCTGGCTGCTGCTGCGGAGCTTGGCGTCACAGAGATTTA 536
BSNT_05311___ 537 CAAAATGGGCGGCGCTCAGGCGATTGCGGCGTTAGCATACGGAACAGAAA 586
||||||||||||.||.||.||||||||.||.||.||.||||||||.||||
BL03408___his 537 CAAAATGGGCGGTGCCCAAGCGATTGCCGCATTGGCTTACGGAACGGAAA 586
BSNT_05311___ 587 CCATTGAACCGGTGGATAAAATCACGGGTCCGGGCAACATTTATGTCGCA 636
|.|||...||.||.||||||||.|||||.||.||.||.|||||.|||||
BL03408___his 587 CGATTACCCCCGTCGATAAAATTACGGGACCCGGAAATATTTACGTCGC- 635
BSNT_05311___ 637 CTT-GCCAAACGGGAAGTGTTCGGCGATGTCGATATCGATATGATTGCCG 685
||| ||.|||||||||||.||||||.|.||.||||||||||||||.||.|
BL03408___his 636 CTTGGCTAAACGGGAAGTATTCGGCCAGGTTGATATCGATATGATCGCGG 685
BSNT_05311___ 686 GACCTAGTGAAATCGTCGTGCTGGCTGATGAAACAGCGA--TTCCGAGCG 733
|.||.||||||||||.|.|.||.|||||....||.||.| |.|| |.|
BL03408___his 686 GTCCAAGTGAAATCGCCATACTCGCTGACAGTACGGCAAACTACC--GGG 733
BSNT_05311___ 734 AAATTGCAGCCGATCTGCTGTCACAGGCGGAACACGATAAGC-------T 776
||||.||.||.|||||.||.||||||||.||||||||| || |
BL03408___his 734 AAATCGCCGCAGATCTACTTTCACAGGCTGAACACGAT--GCGATGGCAT 781
BSNT_05311___ 777 C-AGC--TCATGTGTGTTTGTCACAGATTCCATGGCGCTGGCCGAGGCGG 823
| ||| || |||||||.|||||...|.||||.|||||..|.|
BL03408___his 782 CGAGCATTC--------TTGTCACCGATTCAGAGACGCTTGCCGAATCCG 823
BSNT_05311___ 824 TTTCAGCCGAGGT-----GAGTAAGCAGCT-GAAAACCTTGCCGCGAAGA 867
|||.|...||||| || ||||| |||.|.||| |||.|||.|
BL03408___his 824 TTTTAAAAGAGGTTTACAGA-----CAGCTCGAACATCTT-CCGAGAAAA 867
BSNT_05311___ 868 GAAATAG--CGGAAGCTTC-AGTGAGAGATTACGG-TTGTATATATGTGG 913
||.||.| |||.|| || |.|||.| |.||.|| .|| ||.|||||..
BL03408___his 868 GAGATTGCACGGCAG--TCGATTGACA-ACTATGGCCTG-ATCTATGTTA 913
BSNT_05311___ 914 CGGAAACAATGGTGGAAGC-GATTAATACTG---TCAATACACTCGCGCC 959
|.||.||.|||...||||| |.|| |.| |||||...|||||.||
BL03408___his 914 CAGAGACGATGAATGAAGCAGTTT----CCGTCATCAATGAGCTCGCTCC 959
BSNT_05311___ 960 AGAGCATTTAGAAATCATAACA---CAGTCTCCGGAAGCTTTGCTTGG-C 1005
.||.|||||.|||||..||||| || .||.||.||..||||.|| |
BL03408___his 960 TGAACATTTGGAAATTTTAACAGTTCA---ACCCGATGCGCTGCTGGGAC 1006
BSNT_05311___ 1006 AGTATCAAACATGCGGGTGCAATTTTCTTAGGCAGATACAGCCCTGAGCC 1055
|| ||||||||||||||.||.||||||.|.|||.|.|||||..|.|||||
BL03408___his 1007 AG-ATCAAACATGCGGGCGCCATTTTCCTGGGCCGCTACAGTTCAGAGCC 1055
BSNT_05311___ 1056 TGTCGGTGATTATTTTGCCGGACCGAACCATGTGCTTCCGACAAACGGAA 1105
.||.||.|||||||||||.||.||.||.|||||.||.|||||.|||||.|
BL03408___his 1056 GGTGGGCGATTATTTTGCAGGCCCTAATCATGTCCTGCCGACTAACGGTA 1105
BSNT_05311___ 1106 CAGCCAGATTTTCAAGTCCATTAAACGTAACTGATTTTCAAAAGAAATCG 1155
||||||||||||||||.||..||||.||.||.||.||.||||||...||.
BL03408___his 1106 CAGCCAGATTTTCAAGCCCGCTAAATGTGACAGACTTCCAAAAGCGCTCC 1155
BSNT_05311___ 1156 AGCATTATTTCTTACAGTCAATCAG----CCTTT------GAAGAACATG 1195
|||||.|||||.||||| ||| .|||| || |||
BL03408___his 1156 AGCATCATTTCCTACAG-----CAGGGAAGCTTTCCGCGCGA-----ATG 1195
BSNT_05311___ 1196 CTGAAAGCATCGCGGCTTTTGCCAGACTGGAAGGGTTAGAAGCCCATGCC 1245
||||.|..||.|||||.|||||||||.||||||||.|.|||||||||||.
BL03408___his 1196 CTGAGAAAATTGCGGCCTTTGCCAGATTGGAAGGGCTTGAAGCCCATGCA 1245
BSNT_05311___ 1246 AGATCAATTGAAGCGAGAGAAC--GGAGGATTTCTA-AATGA 1284
|||.||||||||.|.||| ||| |||||| | |.|||
BL03408___his 1246 AGAGCAATTGAATCCAGA-AACCGGGAGGA-----AGACTGA 1281
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