Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05307 and BL03411

See Amino acid alignment / Visit BSNT_05307 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:24
# Commandline: needle
#    -asequence dna-align/BSNT_05307___hisA.1.5803.seq
#    -bsequence dna-align/BL03411___hisA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05307___hisA-BL03411___hisA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05307___hisA-BL03411___hisA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05307___hisA
# 2: BL03411___hisA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity:     548/754 (72.7%)
# Similarity:   548/754 (72.7%)
# Gaps:          32/754 ( 4.2%)
# Score: 1885.5
# 
#
#=======================================

BSNT_05307___      1 ATGAGTGCTTTTACATTATATCCGGCAATTGATATGAGAAACGGCAAATG     50
                     |||||.|..|||||..|||||||.||.|||||.||.|||||||||||.||
BL03411___his      1 ATGAGCGAGTTTACTGTATATCCTGCCATTGACATAAGAAACGGCAAGTG     50

BSNT_05307___     51 TGTCCGCCTTGTTCAAGGGGATTATAATAAGGAAACGATATATGGCGATT    100
                     .|||.|.||..|.||.||.|||||..|.||.||||||||.||.||..|||
BL03411___his     51 CGTCAGGCTCATCCAGGGAGATTACGAAAAAGAAACGATTTACGGTCATT    100

BSNT_05307___    101 CACCGTACGACATGGCTGAGTTA---TTTGCGAAAGAGGGTGCCGAA--T    145
                     |.||....||.|||||   .|.|   |||||..|||||||.||  ||  |
BL03411___his    101 CCCCTCTGGAGATGGC---CTCACGGTTTGCTGAAGAGGGGGC--AAGCT    145

BSNT_05307___    146 GGATCCATCTCGTTGATCTCGACGGGGCCAAAGAAGGGAAAAGGGTAAAT    195
                     ||||.|||||.||.|||.|.|||||.||.|.||||||.||||..||.||.
BL03411___his    146 GGATTCATCTTGTCGATTTGGACGGCGCAAGAGAAGGCAAAAAAGTGAAC    195

BSNT_05307___    196 GACCGCCATGTGATTGAG-ATTGCGCAAAAGCTGAACCTGAAAGTCGAAA    244
                     |.|.||||.||.| |.|| |||||..|.|||||..||.|.|||||..||.
BL03411___his    196 GGCGGCCACGTCA-TAAGCATTGCTGATAAGCTTGACGTTAAAGTGCAAG    244

BSNT_05307___    245 TCGGCGGCGGAATCCGTTCCGAAAAAGACGTCTATGAATATTTATCAGC-    293
                     ||||||||||.|||.|..|||||||||||||.|||||.||.||.|| || 
BL03411___his    245 TCGGCGGCGGCATCAGGACCGAAAAAGACGTGTATGACTACTTGTC-GCA    293

BSNT_05307___    294 AGGAGTCGATCGGGTGATCCTGGGAAGCTCAGCAGTTTCTAACCCTCCGT    343
                     |||.||.||..||||||||||.||.|||||.||.||.||.||..|...||
BL03411___his    294 AGGCGTTGAGAGGGTGATCCTAGGCAGCTCTGCCGTATCAAATACCGAGT    343

BSNT_05307___    344 TTGTCAAAAAAATGCTGAAACAATATGGCGAGAAAATTGCAATCGGACTG    393
                     |||||||||||||||||||....||.||.|.|.|.||.||||||||.||.
BL03411___his    344 TTGTCAAAAAAATGCTGAAGGCCTACGGAGGGCACATCGCAATCGGTCTT    393

BSNT_05307___    394 GATGCGAGAAACGGTTTTGTTTCAACAGAGGGATGGCTGGAAACATCAAC    443
                     ||.||.||..||||.||||||||.||.||.||.|||||.||.||.||..|
BL03411___his    394 GACGCAAGGGACGGATTTGTTTCGACTGAAGGGTGGCTTGAGACCTCTTC    443

BSNT_05307___    444 CCTTAAGGC--AACTGAACTGGGCAAAGAGCTAGCCAATGAAGGTGCGGA    491
                     |.|||..||  ||  ||.||.|||...|||||.||.|||||||||||.||
BL03411___his    444 CGTTAGAGCGGAA--GAGCTTGGCCGCGAGCTTGCAAATGAAGGTGCAGA    491

BSNT_05307___    492 AGTCTTTATTTTTACTGACATCGCGACAGATGGAATGCTGTCAGGCCCAA    541
                     |||.|||||.||.||||||||.|||||.||.||||||||||||||.||.|
BL03411___his    492 AGTTTTTATCTTCACTGACATTGCGACTGACGGAATGCTGTCAGGACCTA    541

BSNT_05307___    542 ATGTTAAAAGTACGGTCGAGCTTGCGAAGGAAACGGGGAAATCGGTGATC    591
                     ||.|.||.|||||.||.||||||||.|.||.|||.||.|||...||.||.
BL03411___his    542 ATATCAACAGTACAGTGGAGCTTGCCAGGGCAACCGGCAAACAAGTCATT    591

BSNT_05307___    592 GCTTCAGGCGGAGTCAGCTCCGTCACGGATCTCGAAGCCCTCGCT-----    636
                     ||.||.|||||.|||||.||..||.|.|||||.||.||.||||||     
BL03411___his    592 GCCTCCGGCGGCGTCAGTTCTCTCGCCGATCTTGAGGCGCTCGCTTCCCG    641

BSNT_05307___    637 CGCTATGAGGCGGACGGCGTCTCTGGAGCGATCATCGGAAAAGCGCTGTA    686
                     ||||     .||||.|||||||||||.||.||..||||||||||.||.||
BL03411___his    642 CGCT-----TCGGAAGGCGTCTCTGGCGCTATTGTCGGAAAAGCTCTTTA    686

BSNT_05307___    687 TACCAATCAGTTTACGCTGAGTGAGGCGCTTGAAAGGGTGAAGC-GCAAA    735
                     ||||||.||.|||||..||..|||.|||||||||||||||  || |||||
BL03411___his    687 TACCAACCAATTTACCGTGGCTGAAGCGCTTGAAAGGGTG--GCGGCAAA    734

BSNT_05307___    736 -TGA    738
                      |||
BL03411___his    735 GTGA    738


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.