Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05296 and BL03415

See Amino acid alignment / Visit BSNT_05296 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:24
# Commandline: needle
#    -asequence dna-align/BSNT_05296___trxB.1.5803.seq
#    -bsequence dna-align/BL03415___trxB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05296___trxB-BL03415___trxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05296___trxB-BL03415___trxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05296___trxB
# 2: BL03415___trxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity:     749/954 (78.5%)
# Similarity:   749/954 (78.5%)
# Gaps:          27/954 ( 2.8%)
# Score: 2993.5
# 
#
#=======================================

BSNT_05296___      1 GTGTCAGAAGAAAAAATTTATGACGTGATTATAATCGGCGCGGGCCCTGC     50
                     |||||||||||||||||.||||||||.|||||.||.||.||.||.|||||
BL03415___trx      1 GTGTCAGAAGAAAAAATGTATGACGTCATTATTATAGGAGCAGGTCCTGC     50

BSNT_05296___     51 TGGGATGACGGCCGCTGTATACACATCAAGAGCGAATTTATCGACATTAA    100
                     .||.||||||||.||.||.||.||.|||||.|||||..|.|||||.||.|
BL03415___trx     51 GGGAATGACGGCAGCCGTTTATACGTCAAGGGCGAACCTGTCGACTTTGA    100

BSNT_05296___    101 TGATTGAAAGAGGAATTCCTGGCGGACAAATGGCCAATACGGAAGATGTA    150
                     ||.||||||||||..||||.||||||||.||||||||||||||.|||||.
BL03415___trx    101 TGGTTGAAAGAGGCGTTCCGGGCGGACAGATGGCCAATACGGAGGATGTT    150

BSNT_05296___    151 GAAAACTATCCTGGATTCGAAAGTATCCTTGGGCCTGAGCTTTCTAACAA    200
                     |||||||||||.|||||.|||||.||.||.||.||.||||||||.||.||
BL03415___trx    151 GAAAACTATCCGGGATTTGAAAGCATTCTGGGACCCGAGCTTTCAAATAA    200

BSNT_05296___    201 AATGTTTGAACACGCGAAAAAATTCGGCGCTGAATACGCTTATGGCGATA    250
                     ||||||||||||.||||||||.|||||||||||.||.||.||.|||||||
BL03415___trx    201 AATGTTTGAACATGCGAAAAAGTTCGGCGCTGAGTATGCGTACGGCGATA    250

BSNT_05296___    251 TTAAAGAGGTCAT---TGACGGCAAAGAGTACAAAGTAGTCAAAGCTGGT    297
                     |||||||.|||.|   |||.||   |||.||.||..|.||||||||.||.
BL03415___trx    251 TTAAAGAAGTCGTCGATGAAGG---AGACTATAAGATCGTCAAAGCGGGA    297

BSNT_05296___    298 TCAAAGGAATATAAAGCCCGTGCTGTCATCATTGCTGCAGGTGCGGAATA    347
                     |||||.||||.||||||.||.||.||||||||..|.|||||.||.|||||
BL03415___trx    298 TCAAAAGAATTTAAAGCGCGCGCGGTCATCATCACAGCAGGCGCCGAATA    347

BSNT_05296___    348 TAAAAAAATCGGCGTGCCTGGCGAAAAAGAATTGGGCGGACGCGGTGTAT    397
                     |||.||..|||||||.||||||||||||||..|.|||||.|||||.||.|
BL03415___trx    348 TAAGAAGCTCGGCGTACCTGGCGAAAAAGAGCTTGGCGGCCGCGGCGTTT    397

BSNT_05296___    398 CTTATTGTGCAGTATGTGACGGCGCTTTCTTTAAAGGCAAAGAACTTGTC    447
                     ||||||||||.||.|||||||||||.|||||||||..||||||.||.|||
BL03415___trx    398 CTTATTGTGCGGTTTGTGACGGCGCCTTCTTTAAAAACAAAGAGCTGGTC    447

BSNT_05296___    448 GTTGTTGGCGGCGGAGATTCCGCGGTTGAAGAAGGCGTATATCTGACTCG    497
                     |||||.||.||.|||||.|||||.||||||||||||||.||..|.||.||
BL03415___trx    448 GTTGTCGGAGGAGGAGACTCCGCTGTTGAAGAAGGCGTGTACTTAACCCG    497

BSNT_05296___    498 TTTCGCTTCAAAAGTAACGATTGTTCACAGACGTGATAAACTCCGTGCTC    547
                     |||||||||.||||||||.||.||.||..|.||.|||||.||..|.||.|
BL03415___trx    498 TTTCGCTTCGAAAGTAACAATCGTCCATCGCCGCGATAAGCTGAGAGCGC    547

BSNT_05296___    548 AAAGTATTCTTCAAGCGAGAGCATTTGATAATGAAAAAGTTGACTTCCTA    597
                     ||||.||||||||.|||.|.||.|||||.||.||||||||.|||||.||.
BL03415___trx    548 AAAGCATTCTTCAGGCGCGCGCGTTTGACAACGAAAAAGTCGACTTTCTC    597

BSNT_05296___    598 TGGAACAAAACCGTGAAGGAAATTCATGAGGAAAACGGCAAAGTCGGTAA    647
                     |||||.||.||.||.||||||||||||||..||.||||.||||||||.||
BL03415___trx    598 TGGAATAAGACGGTCAAGGAAATTCATGAACAAGACGGAAAAGTCGGCAA    647

BSNT_05296___    648 CGTAACGCTTGTCGATACGGTAACCGGTGAAGAAAGTGAATTCAAAACAG    697
                     .||.||.||.|||||||||||.||.||.||||||...||.|||...||.|
BL03415___trx    648 AGTGACACTGGTCGATACGGTCACAGGCGAAGAAGAAGAGTTCCGGACTG    697

BSNT_05296___    698 ACGGCGTATTCATTTACATCGGCATGCTTCCTCTGTCTAAACCGTTTGAA    747
                     |||||||.||.||.||||||||.|||||.||.||.||..|.||.||..||
BL03415___trx    698 ACGGCGTCTTTATCTACATCGGTATGCTCCCGCTTTCAGAGCCTTTCAAA    747

BSNT_05296___    748 AATCTGGGCATTACGAATGAAGAAGGCTACATCGAAACAAACGAACGCAT    797
                     ||.||.||||||||.||||||||.||||||||||..|||||.||||..||
BL03415___trx    748 AACCTCGGCATTACAAATGAAGAGGGCTACATCGTGACAAATGAACAGAT    797

BSNT_05296___    798 GGAGACAAAGGTTGAAGGAATTTTCGCTGCCGGAGACATTCGCGAAAAAT    847
                     |||.|||||.||.|||||.|||||.|||||.||||||||||||||.|||.
BL03415___trx    798 GGAAACAAAAGTCGAAGGCATTTTTGCTGCGGGAGACATTCGCGAGAAAA    847

BSNT_05296___    848 CACTGCGCCAAATCGTAACGGCTACAGGAGACGGAAGTATTGCGGCACAA    897
                     |.||.|||||||||||||||||.|||||.||||||||.|||||.|||||.
BL03415___trx    848 CCCTTCGCCAAATCGTAACGGCAACAGGGGACGGAAGCATTGCCGCACAG    897

BSNT_05296___    898 AGCGTACAGCATTATGTCGAAGAGCTTCAA----------------TAA-    930
                     |||||.|||||.|||.||||||||||..||                ||| 
BL03415___trx    898 AGCGTTCAGCACTATATCGAAGAGCTGAAAGAGAAAGAAAAGGCTGTAAA    947

BSNT_05296___    930 ----    930
                         
BL03415___trx    948 ATAA    951


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