Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05183 and BL03445
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_05183___yveR.1.5803.seq
# -bsequence dna-align/BL03445___yveR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05183___yveR-BL03445___yveR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05183___yveR-BL03445___yveR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05183___yveR
# 2: BL03445___yveR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1154
# Identity: 681/1154 (59.0%)
# Similarity: 681/1154 (59.0%)
# Gaps: 241/1154 (20.9%)
# Score: 1847.0
#
#
#=======================================
BSNT_05183___ 1 ATGGAAACAT-CTGCGGTTAGTCTGTTAGTCGCTGTTTATAACACAGAAA 49
.|||||| || |.||.||||||||..|.||||||||||||||.||||||.
BL03445___yve 1 TTGGAAA-ATCCAGCAGTTAGTCTACTGGTCGCTGTTTATAATACAGAAG 49
BSNT_05183___ 50 CATATAT-CAGAACGTGTCTCGAATCCCTGCGGAACCAGACAGTGGACAA 98
|.|.|.| |.||| .|||.|..|.||.|||...|.||||||..||.|.||
BL03445___yve 50 CTTTTTTGCCGAA-TTGTTTGCAGTCGCTGATCAGCCAGACCTTGAAAAA 98
BSNT_05183___ 99 TATTGAAATCATCATCGTCAATGACGGTTCTCAAGACGCCAGCCCGGATA 148
||||||||||||.|||||||||||||||||...|||||..||||.|.|.|
BL03445___yve 99 TATTGAAATCATTATCGTCAATGACGGTTCAACAGACGGAAGCCAGAAGA 148
BSNT_05183___ 149 TCGCAGAAGAATACGCCAAAATGGAC-----------AACAGGTTCAAGG 187
||...||..|.||||||..||.|||| |||
BL03445___yve 149 TCATTGATCATTACGCCCGAAAGGACGGGCGCATTAAAAC---------- 188
BSNT_05183___ 188 TGATTCATCAGGAGAACCAGGGTCTCGGTGCGGTTCGGAATAAAGGCATT 237
||||||.|||||.||.|||||.|||||.||.||.||.|||||||||||.
BL03445___yve 189 -GATTCAGCAGGACAATCAGGGCCTCGGCGCTGTCCGCAATAAAGGCATC 237
BSNT_05183___ 238 GAGGCAGCACGCGGCGAATTTATCGCGTTTATCGATTCAGACGATTGGAT 287
||.||.||....|||||.|...|.||.||.|||||.||.|||||.|||||
BL03445___yve 238 GAAGCGGCGTCAGGCGAGTACTTGGCATTCATCGACTCCGACGACTGGAT 287
BSNT_05183___ 288 CGAACCTGATTATTGCGAGCAGATGCTCCGGGCAGCAGGCGATGAAA--- 334
.||.||.||.||||||.||...||| .||||||
BL03445___yve 288 TGAGCCGGACTATTGCCAGTCTATG---------------TATGAAAAAG 322
BSNT_05183___ 335 ---------------CTGATCTGGTCATTTGCAATTATGCCGCAGAGTTT 369
|.|||||.|||||.||..|||||||||..||..||
BL03445___yve 323 CGAAGGATGAGGATGCCGATCTTGTCATCTGTGATTATGCCGTTGAAATT 372
BSNT_05183___ 370 GAGGACACTGGCAAAACCATGGACT---CTGACATTGCCCAAACCTAT-C 415
.||||.||.|..||||| ||.|| |.|||||.|...|.|.|||| .
BL03445___yve 373 CAGGATACCGAAAAAAC---GGTCTGCCCGGACATCGGGAAGAACTATGA 419
BSNT_05183___ 416 AGGATCAGCCGAAGGA-GCACTATATCAAGGCGTTATTCGAAGGG-AAGG 463
|||| .|||||||.|| ||| |.|||.||||..||.|| .||||| ||.|
BL03445___yve 420 AGGA-AAGCCGAAAGAGGCA-TTTATGAAGGATTTGTT-AAAGGGTAAAG 466
BSNT_05183___ 464 TCAGAGGGTTTTCATGGAACAAACTGTACAGAAGAAGCATGATTGAAGC- 512
|.||.||.|||||.||||||||.||.|||||..|.||..|||||| |||
BL03445___yve 467 TAAGCGGCTTTTCCTGGAACAAGCTCTACAGGCGGAGTCTGATTG-AGCG 515
BSNT_05183___ 513 CCATCGGCTGTCGTTT--CCGCTCCGAGGCGAGCTGGAGCATGTCGAGGA 560
.|||..|| |||||| ||||||||.|.|||||||||..|..||||.||
BL03445___yve 516 GCATAAGC--TCGTTTTCCCGCTCCGCGACGAGCTGGAAAACATCGAAGA 563
BSNT_05183___ 561 TCAGTTTTTCAGCTTCAG--GGCTCACTTTTTCGC-----CCGCTCAGTA 603
|||.|.|||||||||||| |.|| .||.|.| || ||||...||
BL03445___yve 564 TCAATATTTCAGCTTCAGATGCCT-TCTATAT-GCGAATACCGCGGCGT- 610
BSNT_05183___ 604 TCCT-ACGTAAAAACGCCGCTCTATCATTATCGAATTCACCTTTCCTCCA 652
||.| || ||| ||||||.||||||||..|..|.|||||..|.||||
BL03445___yve 611 TCGTGAC-TAA----GCCGCTTTATCATTACAGGGTCCACCTGGCGTCCA 655
BSNT_05183___ 653 TTGTGCAGCGCTATCAGAAAAAATTGTTTGAATCAGGACTTGCGCTGTAT 702
|.||.||....||||||..|....||||||||...||.||.||.||.|||
BL03445___yve 656 TCGTCCAAAAGTATCAGGCAGGGCTGTTTGAAGACGGTCTCGCTCTTTAT 705
BSNT_05183___ 703 GAGGC-------GAATGCGGCGTTTTTACA------GGAGAACAAC---- 735
||.|| ||.||| .|.||| |||||.|..|
BL03445___yve 706 GAAGCAAACCTGGACTGC------CTGACAAAGCACGGAGAGCTCCCGGC 749
BSNT_05183___ 736 ---AAACTGGAGGAGTATCGCAAGGAGCTTGATAC--CTTTATCGTTCTT 780
||| ||||| ||| || .|| |||||||||....
BL03445___yve 750 TTTAAA--GGAGG-----CGC--------TG-CACGTCTTTATCGTCAAC 783
BSNT_05183___ 781 CACAGCAGCATCTGCATGCTGAATGAATGGAAAACGAGCGGCAGC----- 825
|||.||.|||||.|.||..|.||||||||.|| ||||.|.|.|
BL03445___yve 784 CACGGCTGCATCAGTATTTTAAATGAATGCAA---GAGCCGAAACAAAAA 830
BSNT_05183___ 826 CGCCGGCTGTTT-----GAAAAGCTTAGAAATGTTGGCGTGATATGCGCG 870
|.| || |||||...||.||||.|..||...||||||||.
BL03445___yve 831 CCC-------TTCAATAGAAAAATATAAAAATATCCGCAGCATATGCGCC 873
BSNT_05183___ 871 GACCCGGTGTTTCA---AGAAAGTCTTTCAAAAACGGGTACCGCTCCTTT 917
...|||| ..|||| .||||.||| ||||
BL03445___yve 874 TGTCCGG-AATTCAGGGGGAAAATCT--------------CCGC------ 902
BSNT_05183___ 918 TGACACAAAACGGTCATGCCTGC-TTCTGATGGCGAAATACAGAA----- 961
|..||.||||.|.|| ||| |||..|.|.| ||||
BL03445___yve 903 --------AGTGGACATGTCGGCATTC-GATTCCAAGA---AGAAGCTTT 940
BSNT_05183___ 962 ---------TGATTCCGTTCGTCGCGATGGCAT--CGGCTGTGTAT---- 996
||||||..|| |||.|.| || ||||.||||||
BL03445___yve 941 TGCTTATGCTGATTCGCTT----GCGGTTG-ATGCCGGCAGTGTATGGAT 985
BSNT_05183___ 997 --------------CAGCGGGTGATCGAGTACAAAATG-AGAAACAGAGG 1031
|||....||||||||.|||.|||| |||||.||
BL03445___yve 986 TTGCGGCCATTTACCAGAAAATGATCGAGCACAGAATGAAGAAATAG--- 1032
BSNT_05183___ 1032 GTGA 1035
BL03445___yve 1032 ---- 1032
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