Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05179 and BL03448

See Amino acid alignment / Visit BSNT_05179 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:18
# Commandline: needle
#    -asequence dna-align/BSNT_05179.1.5803.seq
#    -bsequence dna-align/BL03448.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05179-BL03448.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05179-BL03448.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05179
# 2: BL03448
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1646
# Identity:     999/1646 (60.7%)
# Similarity:   999/1646 (60.7%)
# Gaps:         295/1646 (17.9%)
# Score: 2909.0
# 
#
#=======================================

BSNT_05179         0 --------------------------------------------------      0
                                                                       
BL03448            1 TTGAATAAGACATTTGTTTTGAATCTCGGCGCCAATATGGCGTCTTTTTT     50

BSNT_05179         1 -------------------------ATGACGCCTTTTATTGTCAAAACGC     25
                                              .|||||||||...|..||||.||.|
BL03448           51 ATTATCGGTGCTGTTTTCGATGTGGCTGACGCCTTACGTCATCAAGACCC    100

BSNT_05179        26 TCGGTGTGGAAGCGTTTGGCTTTGTTCA-CTTGACACAAAATGTGATTAA     74
                     |||||||.||.||||||||.|||||.|| ||| |||||.|||.||||.||
BL03448          101 TCGGTGTTGAGGCGTTTGGATTTGTCCATCTT-ACACAGAATATGATCAA    149

BSNT_05179        75 TTACTTTTCGGTTATTACCGTGGCGCTCAGCTCGGTTGTCGTTCGGTTCT    124
                     ||||||||||.|.|||||.||.||.||.|||.||||.||.||.|||||.|
BL03448          150 TTACTTTTCGATAATTACGGTCGCCCTGAGCGCGGTCGTTGTCCGGTTTT    199

BSNT_05179       125 TTTCTGTTGCTGCCCACAGGGGAGAGCGGGAGAAAGC-AAATGCGTATAT    173
                     ||||||||.|.|||||||||||||.||..||..|||| |.|.|| |||||
BL03448          200 TTTCTGTTTCCGCCCACAGGGGAGCGCTTGATGAAGCGAGAGGC-TATAT    248

BSNT_05179       174 CAGCAATTATTTAGCGGCCTCTGTTTTGATTTCATTGCTGC---------    214
                     .|..|..|||.|.|          |||.|  |||.||.|||         
BL03448          249 GAATACCTATATCG----------TTTCA--TCACTGGTGCTTTCAGTCA    286

BSNT_05179       215 TCTTG---CTGCCGCTTGCGGGTTCGGCTTTTTTTATTGA---------C    252
                     |||||   .|.|||||.|..||..|||..||||||||.||         .
BL03448          287 TCTTGTTTTTTCCGCTCGGCGGCACGGTGTTTTTTATCGATCAGATCATT    336

BSNT_05179       253 CGCGTCATGAATGTGCCGCAAGCG--CTTTTGGCAGATGTGC-GTTTGTC    299
                     |||||        |.||||   ||  |||||||..||||||| |.|.| |
BL03448          337 CGCGT--------TCCCGC---CGGTCTTTTGGGGGATGTGCAGGTCG-C    374

BSNT_05179       300 GATTTTAATCGGCAGTTTGCTGTTTATTTTAACGTTTCTGATGGCGGGTT    349
                     |.||||.||||||||..||||||||.|.||.||.|||.|||||.||||.|
BL03448          375 GCTTTTGATCGGCAGCCTGCTGTTTTTATTGACCTTTGTGATGTCGGGGT    424

BSNT_05179       350 TCGGTGCTGCACCATTTTATGCCAACCGCCTTTATATCACCAGTTCCATT    399
                     |.|..||.|..||.||||..|||||.....|.|||||.||.||..|.||.
BL03448          425 TTGCCGCCGGTCCGTTTTTCGCCAATAAAATCTATATTACGAGCACGATC    474

BSNT_05179       400 CAGGCGGTGCAAATGCTTATACGGGTGCTGTCTGTGC----TGCTCCTGT    445
                     ||.||..|.||||||||.||.||.||    ||||.||    ||.|..|.|
BL03448          475 CAAGCCATCCAAATGCTGATTCGCGT----TCTGAGCGTATTGTTGATTT    520

BSNT_05179       446 TTGCATGCTTTGCGCCGAAAATCTGGCAGATCCAGCTTGCAGCTTT----    491
                     |.||.||.|||||.|||||.||||||||.||.|||||.||.|||.|    
BL03448          521 TCGCGTGGTTTGCACCGAAGATCTGGCACATTCAGCTCGCCGCTCTCATC    570

BSNT_05179       492 -----AGCT--GGTGCTGTTATTGCGTCTGTGCTGTCTTTCTATTTCTTC    534
                          .|||  ||.|       |||.||    |||||..|||.||||||.
BL03448          571 GCAACCGCTTCGGCG-------TGCATC----CTGTCGATCTTTTTCTTT    609

BSNT_05179       535 AAAAAGCTGATTCCGTGGTTTTCGTTTCGTATGAAGGATCTTTCATTCCG    584
                     ||.|...|||||||.||||||.||||.||..|||.||||.|.||.|| .|
BL03448          610 AAGAGATTGATTCCATGGTTTACGTTCCGGGTGAGGGATATGTCGTT-TG    658

BSNT_05179       585 CACTA---GCAAGGAGCTGTTTCAAGCGGGCGCATGGAGCTCCGTCAATC    631
                     ||  |   ||||..|.|||.||||.|||||.|.||||||||||||||..|
BL03448          659 CA--AAGTGCAAAAAACTGCTTCAGGCGGGAGGATGGAGCTCCGTCAGCC    706

BSNT_05179       632 AAATCGGCGTCCTGCTTTTTTTGCAGATTGATCTGTTAA---CCGCCAAT    678
                     ||.|||||.|||||||.|||.||||.||.|||   ||||   ..||.|||
BL03448          707 AAGTCGGCATCCTGCTGTTTCTGCAAATCGAT---TTAATGGTGGCGAAT    753

BSNT_05179       679 TTGATGCTTGGGGCGTCCGCATCCGGGAAATACGCGGCGATTATCCAGTT    728
                     .|||||||.||||..||||.||||||.|..|||||||||||.||.|||||
BL03448          754 GTGATGCTGGGGGTTTCCGAATCCGGCATGTACGCGGCGATCATTCAGTT    803

BSNT_05179       729 TCCGCTGCTTTTGCGCA-GCTTGGCCGGAACGGTCGCATCCCTGTTTGCG    777
                     |||||||.|.|||||.| |||| .|.||||||.|.||..||.|.|||.|.
BL03448          804 TCCGCTGTTGTTGCGGACGCTT-TCGGGAACGCTAGCGGCCGTATTTTCA    852

BSNT_05179       778 CCCATCATGAC-TTCATATTATTCAAAAGGCGATATGGAAGGATTGATGA    826
                     ||.|..||.|| .|| |||||||||||||||||.|..|||||..|..|..
BL03448          853 CCTACGATTACACTC-TATTATTCAAAAGGCGACAAAGAAGGGCTCGTCC    901

BSNT_05179       827 ATTACGCCAATAAGGCAGTAAGGCTCAATGGTCTTTTGCTTGCACTTCCT    876
                     .|||.||||||.||||.||.|||.|.||.||..|..||||.||..|.||.
BL03448          902 GTTATGCCAATCAGGCCGTCAGGTTTAACGGCATCCTGCTCGCTTTGCCG    951

BSNT_05179       877 GCTGC-CTTATTGGGCGGATTGGCGGGACCTTTTCTGACAATCTGGCTCG    925
                     ||.|| |||.|.|||.||.|| ||.||.||.||||||.|..|.|||||||
BL03448          952 GCGGCGCTTCTGGGGGGGCTT-GCCGGCCCGTTTCTGTCGCTTTGGCTCG   1000

BSNT_05179       926 GACCGTC-------CTTTTCAACGATAGCACCGCTTTTATTTATTCATGC    968
                     |.||.||       |.|||.||       |..|||.|||.|.||.|||||
BL03448         1001 GCCCTTCATTCGAACATTTGAA-------ATGGCTCTTACTGATACATGC   1043

BSNT_05179       969 CGGATACTTGGTTG------TCAGCCTCGCCTTTATGCCGCTGTTTTATA   1012
                     .||.||.|||||||      |.||||..||      ||||||||||||.|
BL03448         1044 GGGCTATTTGGTTGTTTCATTAAGCCCGGC------GCCGCTGTTTTACA   1087

BSNT_05179      1013 TATGGACCGCTTTTAATCAA-CAAAAAACACCGGCG------ATTGTTAC   1055
                     |.|..|||||.|.||| ||| |..|.||||||||||      |..|||.|
BL03448         1088 TCTTTACCGCCTATAA-CAAGCTGAGAACACCGGCGCTGACCACGGTTGC   1136

BSNT_05179      1056 CCTGCTGTTAGGTGCGGTGAATGTGGTGCTGGCGGTCACGCTGAGCGGGC   1105
                     |      ||.||.|..||.|||.||.||||.||..||..|||||||||.|
BL03448         1137 C------TTCGGCGTTGTCAATTTGCTGCTTGCCATCGTGCTGAGCGGCC   1180

BSNT_05179      1106 CGGCTCATCTCGGTCTGTACGGCATAACATTGGCAGGGGC--CA--TTT-   1150
                     ||||....|||||.||.|||||.||..|..||||.||.||  ||  ||| 
BL03448         1181 CGGCGGGACTCGGCCTTTACGGAATTGCGCTGGCCGGTGCGGCAGCTTTA   1230

BSNT_05179      1151 -CTCTTATTTTAAAAAATGCCATCTTTACGCCGCTTTACGTATCCCGCAT   1199
                      |.|      |.|||||.|.|.||||.||.|||.||||.|.|||....||
BL03448         1231 ACGC------TGAAAAACGTCGTCTTCACTCCGATTTATGCATCAAAGAT   1274

BSNT_05179      1200 TACAGGCT---ACAAAAAGCACGTGTTCTTTAAAGGCATCAT-CGGGCTT   1245
                     ||| ||.|   |.||||||  .||.||.|.||||||||| || |||||..
BL03448         1275 TAC-GGGTGAAAGAAAAAG--GGTCTTTTATAAAGGCAT-ATACGGGCCG   1320

BSNT_05179      1246 CTTTCAGCCGCTGTATTTGCCTGGGCGGTCTGTAAGGCAATTCAGTTCGT   1295
                     .||.|.|.||||..||||.|.|.|||.||||||.|.||..||||.|.|.|
BL03448         1321 GTTGCCGGCGCTTCATTTACTTTGGCTGTCTGTTACGCTCTTCAATACTT   1370

BSNT_05179      1296 TGTGAAGATTGACAGCTGGCCGTCATTGATAGCGACGGGAGTGACAGTCA   1345
                     ..|...|||.|.||||..||.|||.|||.|.|..||||.|.||.|.| |.
BL03448         1371 ATTTTCGATCGTCAGCCTGCTGTCTTTGTTTGTCACGGCACTGGCTG-CG   1419

BSNT_05179      1346 GCTTTTGC-TACG--CTGTTTTCGCTTTTATGCTCGT----TTGTACAAA   1388
                     .|.||.|| ||||  ||||||.| ||.||    ||||    ||| ||.||
BL03448         1420 ACGTTGGCTTACGGCCTGTTTGC-CTATT----TCGTCATGTTG-ACGAA   1463

BSNT_05179      1389 AGAGGAAAGAC---------------AGCTGGTATTAAAACGGT------   1417
                     ||.||||.|.|               |||||..|..|.|.||||      
BL03448         1464 AGCGGAACGGCGCATTGTCACAACGAAGCTGCAAGCATACCGGTGTTCTC   1513

BSNT_05179      1418 -----TTCGAAAAACG-----AAAGGAGCTGTGAATCTTTGA----   1449
                          |||     .||     |||||      ||.|.|||.|    
BL03448         1514 TATCCTTC-----CCGTTTCAAAAGG------GATTTTTTAAATAA   1548


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