Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05174 and BL03452

See Amino acid alignment / Visit BSNT_05174 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:18
# Commandline: needle
#    -asequence dna-align/BSNT_05174___yvfE.1.5803.seq
#    -bsequence dna-align/BL03452___yvfE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05174___yvfE-BL03452___yvfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05174___yvfE-BL03452___yvfE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05174___yvfE
# 2: BL03452___yvfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1234
# Identity:     807/1234 (65.4%)
# Similarity:   807/1234 (65.4%)
# Gaps:         155/1234 (12.6%)
# Score: 2470.5
# 
#
#=======================================

BSNT_05174___      1 ATG---CATAAAAA---AATCTACTTATCTCCCCCTCATATGAGCGGCAG     44
                     |||   ||.||.||   |||.||.|||||.||.||.||.|||||||| ||
BL03452___yvf      1 ATGAGTCAGAATAAGCGAATTTATTTATCACCGCCGCACATGAGCGG-AG     49

BSNT_05174___     45 -GGAGCAGCACTATATTTCAGAAGCCTTTCGCTCAAACTGGATCGCGCCG     93
                      .|||.|||.||||.|..|.|||||.|||||..||||||||||||||||.
BL03452___yvf     50 ACGAGGAGCGCTATGTAGCCGAAGCGTTTCGGACAAACTGGATCGCGCCC     99

BSNT_05174___     94 CTTGGGCCGCTCGTGAATTCATTTGAAGAACAGCTGGCAGAACGAGTCGG    143
                     ||.||.||.||.||..|..|||||||||||.||||.||.| .|.|..|||
BL03452___yvf    100 CTCGGTCCCCTTGTCGACACATTTGAAGAAAAGCTTGCCG-CCTATGCGG    148

BSNT_05174___    144 TGTAAAA-----GCAGCCGCTGCGGTCGGCTCAGGAACGGCGGCGATTCA    188
                     .|    |     |.||||||.||.|||.||||||||||.||.|||||.||
BL03452___yvf    149 GG----ACGTCCGGAGCCGCGGCAGTCAGCTCAGGAACAGCTGCGATCCA    194

BSNT_05174___    189 TCTCGCCCTGCGTTTGCTTG----AGGTAAAAGAAGGTGACAGCGTGTTT    234
                     .||.|||.||...|||||.|    .||.|    ||||.||.|..||.||.
BL03452___yvf    195 CCTGGCCTTGAAATTGCTCGGCGTCGGCA----AAGGCGATACGGTCTTC    240

BSNT_05174___    235 TGCCAGTCCTTCACATTTGTAGCAACCGCCAATCCGATTTTATATGAAAA    284
                     |||...||.||.||.||||||||.|.||||||||||||..|||||||..|
BL03452___yvf    241 TGCTCTTCTTTTACGTTTGTAGCGAGCGCCAATCCGATCATATATGAGCA    290

BSNT_05174___    285 AGCGGTGCCCGTCTTTATTGATTCTGAGCCTGATACGTGGAATATGTCG-    333
                     .||.|..||.||.||.|||||||||||.|..|||||.|||||.|||||| 
BL03452___yvf    291 GGCTGAACCGGTTTTCATTGATTCTGAACGGGATACATGGAACATGTCGC    340

BSNT_05174___    334 CCGACAGCCCTTGAAAGAGCATTGGAGGAAGCGAAAAGAAACGGAACA--    381
                     |||| .||.||||||.|.||..|.||.|||||     |.|.|||..||  
BL03452___yvf    341 CCGA-GGCGCTTGAACGGGCGCTTGACGAAGC-----GGAGCGGGCCAGG    384

BSNT_05174___    382 ---CTGCCAAAAGCGGTTATTGCCGTCAATCTATATGGGCAGAGCGCGAA    428
                        ||.||.|||||.||.||.|.||||||..|.||.||.||.||||||||
BL03452___yvf    385 AATCTCCCGAAAGCCGTCATCGTCGTCAACTTGTACGGCCAAAGCGCGAA    434

BSNT_05174___    429 AATGGATGAAATCGTAAG--CCTGTGCGATGCATACGGAGTTCCTGTCAT    476
                     ||||||.||.||  ||.|  |.|.||||||..||..|..||.||||||||
BL03452___yvf    435 AATGGACGAGAT--TATGGCCATTTGCGATCGATTTGCCGTGCCTGTCAT    482

BSNT_05174___    477 TGAGGACGCAGCCGAATCTCTCGGAACAGTCTATAAAGG--GAAGCAAAG    524
                     |||.||.|||||||||||.|||||..|.||.||||||||  |||  ||||
BL03452___yvf    483 TGAAGATGCAGCCGAATCGCTCGGTTCTGTTTATAAAGGCAGAA--AAAG    530

BSNT_05174___    525 CGGAACATTCGGGCGCTTCGGCATTTTTTCATTTAACGGGAACAAAATCA    574
                     |||.||.|||||.|||||||||||||.|||.||.|||||.||||||||||
BL03452___yvf    531 CGGGACCTTCGGACGCTTCGGCATTTATTCGTTCAACGGTAACAAAATCA    580

BSNT_05174___    575 TTACCACATCAGGGGGAGGGATGCTCGTTTCA--AATGATGAAGCCGCAA    622
                     |.||||||||.||.|||||.|||||.|  |||  .|||||||||.||| .
BL03452___yvf    581 TCACCACATCGGGCGGAGGAATGCTGG--TCAGCGATGATGAAGACGC-G    627

BSNT_05174___    623 TTGAA-AAAGCAAGATTTCTCGCTTCGCAGGCACGAGAACCGGCTGTTCA    671
                     ||||| ||.||..|.|||.|.||..|.|||||.||.||.||.||..||||
BL03452___yvf    628 TTGAAGAAGGCGCGCTTTTTAGCCACTCAGGCGCGCGAGCCAGCCATTCA    677

BSNT_05174___    672 TTATCAGCACAGTCAAATTGGAC-ATAATTACAGGCTGAGCAATATCTTA    720
                     |||||||||| |..|||..||.| |.||||||.||.||||||||.|..|.
BL03452___yvf    678 TTATCAGCAC-GAAAAAGCGGGCTACAATTACCGGATGAGCAATGTTCTG    726

BSNT_05174___    721 GCCGGCGTCGGCATTGCCCAGCTTGAGGTGCTGGATGAGCGAGTGGAGAC    770
                     |||||..|||||||.||.|||||.|..||.||||||||.||.||    ||
BL03452___yvf    727 GCCGGAATCGGCATCGCACAGCTCGCCGTTCTGGATGACCGGGT----AC    772

BSNT_05174___    771 A----AGAAGGACCATTTTCACGAGATACAAAAATGCGCT---CGGTCAC    813
                     |    |||.||.|..|||||..|.|.||.||..|.|||||   ||||   
BL03452___yvf    773 ATGCCAGACGGGCGGTTTTCGAGCGCTATAAGGAGGCGCTTTCCGGT---    819

BSNT_05174___    814 ATAGACGGCGTCCGCTTTATGCCGGAGTACGCAGCAGGCGTATCCAATCG    863
                     ||.||.||..|....||.|||||.|||      ||.|||.|.||.||.||
BL03452___yvf    820 ATCGAAGGTATAGAATTCATGCCTGAG------GCCGGCATGTCAAACCG    863

BSNT_05174___    864 CTGGCTCACCACGCTCACACTTGA-TAACG---GGCTCAGCCCATAT---    906
                     |||||||||.||           | |||||   |.|.||||..|.||   
BL03452___yvf    864 CTGGCTCACGAC-----------ATTAACGTTAGACACAGCAAAGATTCA    902

BSNT_05174___    907 -------------GACGTAGTTCAACGTCTTGCTGAAGAAAACATTGAAG    943
                                  |||.|..|..|||..||.||..|.|||||||||||.|
BL03452___yvf    903 AACAACACCGGCGGACATCATCGAACAGCTCGCAAATGAAAACATTGAGG    952

BSNT_05174___    944 CCCGTCCGCTGTGGAAGCCGCTCCATACCCAGCCGCTATT------CGAT    987
                     ||||.|||.|.||||||||..|.||.|..|||||.||.||      ||  
BL03452___yvf    953 CCCGCCCGTTATGGAAGCCTTTGCACAGACAGCCCCTTTTTAAAGGCG--   1000

BSNT_05174___    988 CCGGCTTTATTTTATTCTCATGAAGATACAGGAAGC---GTATGCGAAGA   1034
                      ||||   .||||||.|.||.||.|| .||||  ||   ||.|||...||
BL03452___yvf   1001 -CGGC---CTTTTATCCGCACGATGA-CCAGG--GCTCTGTCTGCTGCGA   1043

BSNT_05174___   1035 TTTGTTCAAGCGAGGAATCTGTCTCCCATCGGGGTCCAATATGAC-AGAA   1083
                     .||.||..||||.||..||||.||.||.||.||.||.|.|||||| .|||
BL03452___yvf   1044 CTTATTTCAGCGCGGGCTCTGCCTGCCGTCAGGATCAAGTATGACGCGAA   1093

BSNT_05174___   1084 GATGAGCAAGACCGGGTCATTGAAGTGCTACTGCGCTTATTCCAAACTGC   1133
                      |.|||||.||||||||.|||.||.|..|                  |||
BL03452___yvf   1094 -AAGAGCAGGACCGGGTAATTCAAATCGT------------------TGC   1124

BSNT_05174___   1134 CGAGGTGAAGAAATGGACAGCAAGCATTCGATGA   1167
                     |||...||..||||            .|..||||
BL03452___yvf   1125 CGACCGGATTAAAT------------ATAAATGA   1146


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