Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05173 and BL03453
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_05173___yvfF.1.5803.seq
# -bsequence dna-align/BL03453___yvfF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05173___yvfF-BL03453___yvfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05173___yvfF-BL03453___yvfF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05173___yvfF
# 2: BL03453___yvfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity: 649/1064 (61.0%)
# Similarity: 649/1064 (61.0%)
# Gaps: 181/1064 (17.0%)
# Score: 1810.0
#
#
#=======================================
BSNT_05173___ 1 ATGG-----ACAGCAAGCATTCGATGATCAGCCTGAAACAGAAACTGTCC 45
|||| ||| .||||.|||..||||.|.||.||.||.|||.|.
BL03453___yvf 1 ATGGCGATTACA-----TATTCCATGGACAGCTTAAAGCATAAGCTGGCA 45
BSNT_05173___ 46 GGGCTGCTCGACGTCATACCGAAACA---ATCAGAGATTATATATGCTGA 92
|...|..|.||.|||||.||.|..|| |||||...|| ||..|| ||
BL03453___yvf 46 GAAATTTTGGATGTCATTCCAAGGCATTCATCAGTCGTT-TACTTG--GA 92
BSNT_05173___ 93 CTATCCTCTATACGGAAATGTAGGGGATTTATTTATTATGAAAGGAACAG 142
|||.||.|||||||||||.||.||||||.||||.||.|||||||||||.|
BL03453___yvf 93 CTACCCGCTATACGGAAACGTCGGGGATCTATTGATCATGAAAGGAACGG 142
BSNT_05173___ 143 AAGCTTTCTTTAAAGAACACGGGATTCGGGTCAGAAAACGCTGGAATCCT 192
|||||||.|||.|||.|.||||.||...|||..|..||.|.||||||.|.
BL03453___yvf 143 AAGCTTTTTTTGAAGCATACGGCATCAAGGTGCGCGAAAGATGGAATGCG 192
BSNT_05173___ 193 GACAATT---TTCCAGTCGGGCG------AAAGCTGGATCCTCATCTCAT 233
||.|||| ||||.|.|.|.|| ||| |||..| |||
BL03453___yvf 193 GAGAATTTCATTCCGGGCCGCCGCATTCCAAA---GGACGC------CAT 233
BSNT_05173___ 234 CATCGTCTGCCAGGGAGGCGGAAACTTCGGGGATCTGTATCCGTATTATC 283
|||.||.||.|||||.|||||.||.|||||.||..||||.|| ||
BL03453___yvf 234 CATTGTTTGTCAGGGGGGCGGCAATTTCGGCGACTTGTACCC------TC 277
BSNT_05173___ 284 AAGGCTT-------TAGAGAGAA--AATCGTCCAAACCTATCCGAACCAC 324
| ||| |..|||||| ..|.|||.||...||.|||.||.||
BL03453___yvf 278 A---CTTCCAGCAGTTCAGAGAACGGGTGGTCGAACATTACCCGGACAAC 324
BSNT_05173___ 325 AAAATTGTGATCCTGCCGCAATCGATTTATTTTCAAAACAAAGACAACCT 374
...||.||.||.||||||||.||||||||||.|.|..|..||||.||..|
BL03453___yvf 325 CGGATCGTCATTCTGCCGCAGTCGATTTATTATGAGCATGAAGAAAATAT 374
BSNT_05173___ 375 ----CAAACGGACGGCAGAGATATTTT-----CTAAGCATGCGAACCTTC 415
.|||||..|||| ||||| || ||..||.|.||.|
BL03453___yvf 375 AATAAAAACGCGCGGC------ATTTTGGCGGCT---CACCCGGATCTGC 415
BSNT_05173___ 416 ACATCATGACAAGGGAAAAAGCCTCCTATGCTA------CGGCACAG-GC 458
||.|..|.||..|||||||.||.|| ||.|.| ||.|| || |
BL03453___yvf 416 ACTTATTCACGCGGGAAAAGGCATC--ATTCGATTTTGCCGTCA-AGCG- 461
BSNT_05173___ 459 CTATTT--------TACAACAAATCACATTCAGCTTCTGCCTGATATGGC 500
||| |..||.|.||||.|.|.| ||||.||||||||
BL03453___yvf 462 ---TTTCGAAGAGGTGAAAAACATCAAAATGA-----TGCCCGATATGGC 503
BSNT_05173___ 501 TCATCAGCTGTTTCCCGTCATTCCCACGCAGCA---GCCGTCCAATCAAA 547
|||.|||||.|..||..| |||.||| |||| |||
BL03453___yvf 504 TCACCAGCTCTGGCCGAT--------CGCGGCACCTGCCG-------AAA 538
BSNT_05173___ 548 AG---------------CTGAGATTTATCCGAACAGATCATGAAGCAAAC 582
|| |||.|.||.|||.|.||.||..|.|||||.|||
BL03453___yvf 539 AGCCGTCCGAGTCCGTTCTGCGGTTGATCAGGACCGACAAAGAAGCCAAC 588
BSNT_05173___ 583 --CAGGCGCTTCAGGAACACGCA---GAAGCGGAAAGCTACGACTGGCGC 627
||| .||.|||.|| ||| ||..||||.|..|||||.|||..|
BL03453___yvf 589 AGCAG--CCTGCAGAAA---GCAGGGGAGCCGGACACGTACGATTGGAAC 633
BSNT_05173___ 628 ACGGTGCTGTCAGCT--TCAGACCGC--------CGGA--CGATTGCTTT 665
||||.|| |||||..|| |||| |.|..||
BL03453___yvf 634 --------GTCATCTTATCAGAAGGCGACAAACGCGGAATCAAACGC--- 672
BSNT_05173___ 666 TCTCCAAACGCTGAACGTCTTGAATAAAAAAGCAGGCAACCCTTTGCCCA 715
||.||.|||.|.||.|||.|.||.||||||||.|||||.||..||||.|
BL03453___yvf 673 -CTGCAGACGATCAATGTCCTCAACAAAAAAGCGGGCAATCCGCTGCCGA 721
BSNT_05173___ 716 TTGCGTATATATGGGAAAAATAC-----TCGGATTATATCGTCCAAAAAG 760
|.||.|.| |||.|||| || |||||.....|||||.|.|||.
BL03453___yvf 722 TCGCTTCT-TATTGGAA----ACGCTTTTCGGACAGCCTCGTCGACAAAT 766
BSNT_05173___ 761 CGATTCGGTTTTTCAGCCGTTACGAATCGGTGGAAACGTCAAGGCTGCAC 810
|.||.||.||.||||||||.||.|||||.||.|..||.||||||||||||
BL03453___yvf 767 CAATCCGTTTCTTCAGCCGCTATGAATCAGTCGTTACTTCAAGGCTGCAC 816
BSNT_05173___ 811 GGACACATCTTGTCTTCTCTTCTTCAAAAAGAAAACACGGTCATTGATAA 860
||.||||||||.||.|..||.||...||||||||||...||.|||||.||
BL03453___yvf 817 GGCCACATCTTATCGTGCCTGCTCGGAAAAGAAAACGTAGTGATTGACAA 866
BSNT_05173___ 861 TTCCTACGGGAAAAACGCCAATTACTTTCATACCTGGATGGAAGGCGTGC 910
.||||||||.||||||||.|||||||...||||.||||||.|||.|.|.|
BL03453___yvf 867 CTCCTACGGAAAAAACGCGAATTACTACAATACATGGATGAAAGACATCC 916
BSNT_05173___ 911 CAAGCACCCATCTCATCCAACACGCCTCA-----AAGAAGGAAAACCTTC 955
|.|..||..|.||.||.|||.|| |.||| |||.||.|||||| .|
BL03453___yvf 917 CGAATACGAAACTGATTCAAAAC-CATCAGACAGAAGCAGAAAAACC-GC 964
BSNT_05173___ 956 CTGCTCACATGTGA 969
|||.||||.|.|||
BL03453___yvf 965 CTGTTCACGTATGA 978
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