Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05168 and BL03455

See Amino acid alignment / Visit BSNT_05168 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence dna-align/BSNT_05168.1.5803.seq
#    -bsequence dna-align/BL03455___yvfI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05168-BL03455___yvfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05168-BL03455___yvfI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05168
# 2: BL03455___yvfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 780
# Identity:     539/780 (69.1%)
# Similarity:   539/780 (69.1%)
# Gaps:          96/780 (12.3%)
# Score: 1821.0
# 
#
#=======================================

BSNT_05168         1 TTGAAATACAAACAGATTAAAACAAAAAAAATATATGAAGAAGTAGCGGA     50
                     ||||||||||||||.||.||.||.||||||||||||||||||||.|||||
BL03455___yvf      1 TTGAAATACAAACAAATCAAGACGAAAAAAATATATGAAGAAGTCGCGGA     50

BSNT_05168        51 TGCACTATTAGATAT-GATCAAAAACGGCGA-ATTGAAGCCTGGGGATAA     98
                     .||.||..|.|| || |||.||||.|||.|| .||| ||||.||.||.||
BL03455___yvf     51 AGCGCTTCTTGA-ATCGATTAAAAGCGGAGAGCTTG-AGCCCGGCGACAA     98

BSNT_05168        99 ACTGGACTCTGTTCAGGCGCTTGCTGAGAGCTTTCAAGTCAGCCGTTCAG    148
                     .||.|||||.||.||.|||||.||.||.||||||||.|||||||||||.|
BL03455___yvf     99 GCTTGACTCCGTCCAAGCGCTCGCCGACAGCTTTCAGGTCAGCCGTTCGG    148

BSNT_05168       149 CGGTTCGCGAAGCACTTTCTGCGCTAAAGGCGATGGGGCTTGTCGAAATG    198
                     |.||..|.|||||.||.||.|||.||||.|||||||||.|.|||||||||
BL03455___yvf    149 CCGTAAGGGAAGCGCTGTCCGCGTTAAAAGCGATGGGGATGGTCGAAATG    198

BSNT_05168       199 AAACAGGGAGAAGGCACGTATCTGAAGGAA--TTTGAGCTCAATCAAATT    246
                     ||.|||||.|||||.||||||.||||  ||  |||||||...|.||||||
BL03455___yvf    199 AAGCAGGGGGAAGGGACGTATGTGAA--AAGGTTTGAGCCTGAGCAAATT    246

BSNT_05168       247 TC--TCAGCCGCTCTCAGCCGCCCTTCTGATGAAAAAAGAGGACGTCAAG    294
                     ||  ||  ||.||.||.||.||.|||.||||||||||..|.||.|||  |
BL03455___yvf    247 TCCATC--CCCCTTTCGGCTGCACTTTTGATGAAAAAGAAAGATGTC--G    292

BSNT_05168       295 C--AGCTGCTCGAGGTCAGAAAACTGCTTGAAATCGGCGTGGCTT-CACT    341
                     |  |.||||||||.|||.|.|||.|.|||||||||||.|..|.|| ||.|
BL03455___yvf    293 CTGAACTGCTCGAAGTCCGTAAAATACTTGAAATCGGGGCAGTTTCCAGT    342

BSNT_05168       342 AGCGGCTGAAAAAAGGACAGAAGCAGATCTCAAAAGAATTCATGATGCAC    391
                      ||||||.|||||.|.||.||.|..||||||..|.|.||.||.||.||||
BL03455___yvf    343 -GCGGCTCAAAAACGCACGGAGGATGATCTCGGACGCATGCAGGAAGCAC    391

BSNT_05168       392 TAAAGGAAATGGGCAGCATTGAAGCGGACGGG------GAGCTGGGAGAG    435
                     |..||||.||  |.|||  ||  |||||||||      ||.||.||.||.
BL03455___yvf    392 TTGAGGATAT--GAAGC--TG--GCGGACGGGAACGGCGAACTTGGCGAA    435

BSNT_05168       436 AAAGCAGACTTTGCATTTCATCTTGCGCTTGCGGACGCTTCTCAAAATGA    485
                     |||||.|||.|.||.|||||.|||||||||||.|.||||||.||.||.||
BL03455___yvf    436 AAAGCCGACCTCGCGTTTCACCTTGCGCTTGCCGGCGCTTCGCAGAACGA    485

BSNT_05168       486 ACTTCTTAAACACTTGATGAATCACGTGTCATC-------ATTGCTGCTG    528
                     .||.||.|||..||||||||||||.||||||||       |||       
BL03455___yvf    486 TCTGCTGAAAGGCTTGATGAATCATGTGTCATCTCTCTTAATT-------    528

BSNT_05168       529 GAAACAATGAGGGAAACGAGGAAAATCTGGCTGTTTTCCAAGAAGACCTC    578
                     ||.||.||||||||.|||.|.|||||.||||||||.||.|||||.||..|
BL03455___yvf    529 GAGACGATGAGGGAGACGCGCAAAATTTGGCTGTTCTCGAAGAATACAAC    578

BSNT_05168       579 CGTTCAGCGGCTGTATGAGGAGCACGAACGGATTTACAATGCTGTGGCTG    628
                     .|||.||||.||.||||||||.||||||...||.||..|.||||||    
BL03455___yvf    579 TGTTAAGCGCCTTTATGAGGAACACGAAGCCATCTATCAGGCTGTG----    624

BSNT_05168       629 CCGGGA-----ACGGTGCACAGGCGGAAGC-CGCCATGC----TGGCGCA    668
                      ..|||     ||||...|.|.|||| ||| .||.||||    |    ||
BL03455___yvf    625 -AAGGAAAAAGACGGCCAAAAAGCGG-AGCAAGCGATGCACAAT----CA    668

BSNT_05168       669 TTTGACGAATGTGGAAGATGTGCTTTCGGG----ATATTTCGAGGAAAAT    714
                     |.||||.|||||||||.|||||||    ||    ||||||.||.||||  
BL03455___yvf    669 TCTGACAAATGTGGAAAATGTGCT----GGCCTCATATTTTGAAGAAA--    712

BSNT_05168       715 GTGCAATAA---------------------    723
                      .|.||.||                     
BL03455___yvf    713 -CGAAACAAGCCGACGAGCCGGCTATTTAA    741


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