Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05143 and BL03461
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:15
# Commandline: needle
# -asequence dna-align/BSNT_05143___yvbW.1.5803.seq
# -bsequence dna-align/BL03461___yvbW.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05143___yvbW-BL03461___yvbW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05143___yvbW-BL03461___yvbW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05143___yvbW
# 2: BL03461___yvbW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity: 1029/1399 (73.6%)
# Similarity: 1029/1399 (73.6%)
# Gaps: 86/1399 ( 6.1%)
# Score: 3738.0
#
#
#=======================================
BSNT_05143___ 1 ATGAAAAACGACAATCAAACGTTAAAACGCACGATGACGTCCCGCCATAT 50
|||.|.||.||||..||.|.|.|..|.|||||||||||.||.||.|||||
BL03461___yvb 1 ATGGAGAAAGACATGCAGAAGCTCGAGCGCACGATGACATCGCGGCATAT 50
BSNT_05143___ 51 TATGATGATGGCGCTGGGCGGAGCAATCGGCGCAGGTTTATTTAAGGGGA 100
||||||||||||..||||||||||.||.||.|||||.||||||||.||.|
BL03461___yvb 51 TATGATGATGGCATTGGGCGGAGCGATTGGGGCAGGATTATTTAAAGGAA 100
BSNT_05143___ 101 GCAGCTCAGCGATCGATGTGGCAGGGCCATCTGTCATTATCGCATACCTG 150
|||||..||||||||||.||||.|||||.||.|||||.|||.|.|||.||
BL03461___yvb 101 GCAGCAAAGCGATCGATTTGGCGGGGCCTTCGGTCATGATCCCCTACTTG 150
BSNT_05143___ 151 CTCGGCGGGATTATTTTGCTGTTTATTATGCAGGGACTGGCGGAAATGGC 200
.|||||||..|.|||||||||||||||||||||||.|||||.||.|||||
BL03461___yvb 151 ATCGGCGGCGTGATTTTGCTGTTTATTATGCAGGGGCTGGCCGAGATGGC 200
BSNT_05143___ 201 TGTTCGAAACCGTAACGCCAGAACCTTCCGTGATCTTGTCCAGCAGGTAT 250
|||.||||||.|..|.||||||||.|||.|.|||||.||.||...|.|||
BL03461___yvb 201 TGTCCGAAACAGCGAAGCCAGAACATTCAGGGATCTGGTTCAATCGATAT 250
BSNT_05143___ 251 TGGGAAATTACGCCGCTTACTTTTTGGACTGGATCTACTGGAAAATGTGG 300
|.||....||.||||||||.||||||||||||||.|||||||||||||||
BL03461___yvb 251 TAGGGCCGTATGCCGCTTATTTTTTGGACTGGATATACTGGAAAATGTGG 300
BSNT_05143___ 301 GTGCTTAACATTGCGGCTGAAGCTGTTGTAGCTGCGATTTTCATTCAATA 350
||.||.||.|||||||||||.||||||||.||.|||||.||..|.||.||
BL03461___yvb 301 GTTCTCAATATTGCGGCTGAGGCTGTTGTCGCCGCGATGTTTTTGCAGTA 350
BSNT_05143___ 351 TTGGCTGCC-GGGCTGCCCGATCTGGGTGTTGGC---ATTAGGAATTTCT 396
.|||||||| |||||| |||||.||||||.|||| .||.| ||||.
BL03461___yvb 351 CTGGCTGCCGGGGCTG-CCGATTTGGGTGCTGGCGCTGTTCG---TTTCA 396
BSNT_05143___ 397 CTTATCGTCACGATTGTAAACTTGCTTTCTGTTAAAATCTTCGCCGAAAC 446
||..||.|.||||..||.||.|||||||||||.||||.|||.|||||.||
BL03461___yvb 397 CTCGTCATTACGAGCGTGAATTTGCTTTCTGTCAAAAGCTTTGCCGAGAC 446
BSNT_05143___ 447 TGAATATTGGCTGGCAATGATCAAGATTACCGTTATTATTATCTTTATTA 496
.|||||.|||||.||..|.||.||.||.||.||.|||.|..|||||||||
BL03461___yvb 447 GGAATACTGGCTTGCTCTCATTAAAATCACAGTGATTGTCGTCTTTATTA 496
BSNT_05143___ 497 T-TCTGGGATTGCTGCTCTTATTTGTATCATTCGGTGATCATACAGCATC 545
| || .|||||..|..|.||||||.|.||.||.||..|.|||.|.||...
BL03461___yvb 497 TATC-CGGATTTATCTTGTTATTTTTCTCTTTTGGACAACATTCGGCTGT 545
BSNT_05143___ 546 CGGATTTTCCAACCTGACAGACCACGGCGGATTTTTCCCGCACGGCGGCA 595
|||.|||.|..|..||||||||||.|||||.||.||||||.|.||||.|.
BL03461___yvb 546 CGGCTTTACTCATTTGACAGACCATGGCGGCTTCTTCCCGAATGGCGCCG 595
BSNT_05143___ 596 CAGGGCTGATCACGGCGATGCTTGTCGTCATCTACTCTTACGGCGGTACA 645
.|||||||||.||.||.|||||||||||.|||||.||.||||||||.||.
BL03461___yvb 596 GAGGGCTGATTACAGCCATGCTTGTCGTGATCTATTCCTACGGCGGAACG 645
BSNT_05143___ 646 GAAATTATCGGTGTAACGCTTGCAGAGACAAAAAATCCGGAAAAGGTTGT 695
|||||||||||.||.||.||.||.||.||.||||||||.||.||||||||
BL03461___yvb 646 GAAATTATCGGGGTGACCCTGGCGGAAACCAAAAATCCTGAGAAGGTTGT 695
BSNT_05143___ 696 CCCGAAAGCTGTCCGCAGCACACTGACACGGATTGTCGCGTTTTACCTGC 745
.||.|||||.||.||..|.||..|.||.||.|||.|.||.|||||.||.|
BL03461___yvb 696 GCCTAAAGCCGTGCGGGGAACGTTAACGCGCATTATTGCTTTTTATCTTC 745
BSNT_05143___ 746 TGCCGTTTTTCATCATCGTCAGCCTGATTCCATGGAACCAAGTCAATTCG 795
|||||||||||.|.|||||||||.|||||||||||||.|||||.||...|
BL03461___yvb 746 TGCCGTTTTTCGTGATCGTCAGCTTGATTCCATGGAATCAAGTGAACGGG 795
BSNT_05143___ 796 GTTCCGGAAAGTCCTTTCGTGATGGTCTTTAAAATGGTAGGCATTCCGGG 845
||..||||.|||||.||.||.|||||||||||.|||.|.|||.||||.||
BL03461___yvb 796 GTGTCGGAGAGTCCCTTTGTCATGGTCTTTAAGATGATCGGCGTTCCCGG 845
BSNT_05143___ 846 CGCGGACCATATCATGAATGCAGTCATCCTGCTGGCGATCATTTCTTCTA 895
.|||||.|||.|.||||||||.|||||..|.||||||.||||||||||||
BL03461___yvb 846 AGCGGATCATTTGATGAATGCGGTCATTTTACTGGCGGTCATTTCTTCTA 895
BSNT_05143___ 896 TGAATTCAGGTTTATACGGATCATCACGCATTTTGTATACACAGGCAAGT 945
||||.|||||..|.|||||..|.||.||.||||||||||||||||| ||
BL03461___yvb 896 TGAACTCAGGGCTTTACGGCGCCTCCCGTATTTTGTATACACAGGC--GT 943
BSNT_05143___ 946 --GACGGAAGGCTTCCAAAGGTCTTCTCGAAGCTTTCATCGAAAAACGTA 993
||||||||..|.||.||..||||.||||.||||||..|||.|||.||.
BL03461___yvb 944 CAGACGGAAGAATGCCGAAAATCTTTTCGAGGCTTTCTGCGAGAAAGGTG 993
BSNT_05143___ 994 CCGATGTTTGCGATTCTGATGTGCACTTC-TTCTCTCTATA--TTGGCGT 1040
|||.|.|.|.|||||||..|.|||||||| |||| |||| |.|||||
BL03461___yvb 994 CCGGTTTATTCGATTCTATTATGCACTTCGTTCT---TATACTTGGGCGT 1040
BSNT_05143___ 1041 ATTGATTTCTCTGTTCGCAGGAAGCCAAACATTTAATTATTTAATGGGAT 1090
||||.||||.||.||.||.||.||||||||.|||.|.|||||.|||||.|
BL03461___yvb 1041 ATTGTTTTCACTATTTGCCGGCAGCCAAACGTTTGAATATTTGATGGGGT 1090
BSNT_05143___ 1091 CATTGGGATATACCGTTTTATTCATTTGGCTGATCATCGGATT-----CG 1135
|..|.||.||||||||..|..|.||.|||.|| |.|||| ||
BL03461___yvb 1091 CTCTCGGCTATACCGTCCTTGTGATCTGGATG-----CTGATTGCCGCCG 1135
BSNT_05143___ 1136 CTCATTTAAAATCGAGAAAAC---AGCAAAC----GGAAACACCGGCCTA 1178
|.||||||||||||||.|||| |.||||| |||||| |.|||
BL03461___yvb 1136 CCCATTTAAAATCGAGGAAACGGAATCAAACAGCTGGAAAC----GGCTA 1181
BSNT_05143___ 1179 TTATGTAAAATGGTTCCCGTACACGACATGGTTTGCGATTGTGGCATTAC 1228
.|||||.|||||||||||.||.|||||.|||.|.||.|| ||||.|
BL03461___yvb 1182 CTATGTCAAATGGTTCCCTTATACGACTTGGGTGGCAAT-----CATTTC 1226
BSNT_05143___ 1229 TC-----GCCATTCTGATCGGAGTCATCATGACAACATCAATTGTCATTA 1273
.| |||||.||||||||.||||||.||||.||.||.||||||||||
BL03461___yvb 1227 GCTGACAGCCATACTGATCGGTGTCATCCTGACCACGTCGATTGTCATTA 1276
BSNT_05143___ 1274 CCGGCATT----ACTGCGGCGATCTACCTTTTG---ATTACAGTTGCATA 1316
|||| ||.||||.|||||| |||| ||||..|.|||.||
BL03461___yvb 1277 ----CATTGGTGACGGCGGGGATCTA---TTTGCTCATTAGCGCTGCTTA 1319
BSNT_05143___ 1317 TTTGGTCAAAGGACGCAAGCA-TCAG--------------------TAA 1344
|||..|.||||||.|.||.|| .||| |||
BL03461___yvb 1320 TTTCTTTAAAGGAAGAAACCAGACAGCCGGCCAAACGGCCGCTTCTTAA 1368
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