Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05116 and BL03475
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:13
# Commandline: needle
# -asequence dna-align/BSNT_05116___opuCB.1.5803.seq
# -bsequence dna-align/BL03475___opuCB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05116___opuCB-BL03475___opuCB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05116___opuCB-BL03475___opuCB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05116___opuCB
# 2: BL03475___opuCB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 661
# Identity: 484/661 (73.2%)
# Similarity: 484/661 (73.2%)
# Gaps: 14/661 ( 2.1%)
# Score: 1685.0
#
#
#=======================================
BSNT_05116___ 1 ATGAATCAAATGATG---ACTTTTTT--GCAAACGAACGGCGGAGAGCTG 45
||||||||..| || |.|||.|| ||| .||||||||.||..||
BL03475___opu 1 ATGAATCAGCT--TGTCCAATTTCTTCAGCA---CAACGGCGGGGAAATG 45
BSNT_05116___ 46 CTGTATAAAACAGGAGAGCATTTATATATTTCACTCATAGCCGTTGTATT 95
||.|||||||||.|.|||||.||||||||.||..|..|.||.|||.|..|
BL03475___opu 46 CTTTATAAAACATGGGAGCACTTATATATATCCATTTTCGCGGTTCTGCT 95
BSNT_05116___ 96 GGGCATTATCGTTGCAGTGCCGCTCGGCGTTGCTCTTACCAGAATGAAAA 145
.|||||.||..|.||.||.||||||||.||.|.|.|.||.||||||||||
BL03475___opu 96 CGGCATCATTTTCGCGGTTCCGCTCGGTGTCGTTTTAACGAGAATGAAAA 145
BSNT_05116___ 146 AAGGCGCAGGTGCGGTAATCGGTTTCGTAAACATTGTGCAAACCCTGCCG 195
||||.||.||.|..||.|||||..|.||.|||||..|.||.||.||||||
BL03475___opu 146 AAGGAGCCGGCGTCGTGATCGGCGTTGTCAACATCATTCAGACGCTGCCG 195
BSNT_05116___ 196 AGTCTGGCGATTTTAGCCTTTTTTATTCCGCTTCTCGGCGTAGGAAAAGT 245
|||.|||||||..|.||.||||||||.|||||||||||.||.|||||..|
BL03475___opu 196 AGTTTGGCGATCCTGGCGTTTTTTATCCCGCTTCTCGGAGTGGGAAAGAT 245
BSNT_05116___ 246 GCCTGCGATTGTCGCTTTATTTTTCTATTCGGTGCTGCCGATCCTGCGCA 295
.||.|||||||||||..|.|||||||||||.||.||.|||||.|||.|.|
BL03475___opu 246 TCCGGCGATTGTCGCGCTGTTTTTCTATTCAGTCCTACCGATTCTGAGAA 295
BSNT_05116___ 296 ATACGTATACCGGCATTAAAGGTGTAAATAAAAACCTCCTGGAATCGGGG 345
|.||.||.||.|||.|.|||||.||.|||.||||..|.||.||.|| .||
BL03475___opu 296 ACACTTACACGGGCGTAAAAGGCGTCAATCAAAATTTGCTTGAGTC-AGG 344
BSNT_05116___ 346 AAAGGG-ATTGGCATGACCGGCTGGGAGCAGATTCGGCTCGTTGAAATCC 394
|||||| ||.||.|||||.|..|||||.||.||.||.||.||.||..|.|
BL03475___opu 345 AAAGGGAATCGGTATGACTGCATGGGAACAAATCCGCCTGGTCGAGCTGC 394
BSNT_05116___ 395 CGCTGGCGATTCCCATCATCATGGCGGGGATCCGCACATCAACGATCTAT 444
||||..||.|.||..|.||||||||.||.|||||.||.||.||..|.||.
BL03475___opu 395 CGCTATCGGTGCCGGTGATCATGGCAGGCATCCGGACGTCCACCGTTTAC 444
BSNT_05116___ 445 CTAATTGGCTGGGCGACACTTGCGTCGTTTATCGGGGGAGGCGGCCTCGG 494
.||||.|||||||||||.|||.||.|.||||||||.||.|||||.|||||
BL03475___opu 445 TTAATCGGCTGGGCGACGCTTTCGGCTTTTATCGGCGGCGGCGGTCTCGG 494
BSNT_05116___ 495 GGACTATATTTTTATCGGACTGAACCTATACCAGCCTGAATATATCATTG 544
.|||||||||||||||||.||.|||||.|||||||||||.||.||.||.|
BL03475___opu 495 CGACTATATTTTTATCGGGCTCAACCTGTACCAGCCTGAGTACATTATCG 544
BSNT_05116___ 545 GCGGTGCCGTGCCTGTCACAATTCTGGCAATTATTATTGATTATGTGCTG 594
.|||.||.|||||.||.||.||.|||||.||..|.||.||.|||.|.|||
BL03475___opu 545 CCGGAGCGGTGCCGGTTACGATACTGGCCATCGTGATCGACTATATTCTG 594
BSNT_05116___ 595 GCTGTGACAGAACGA-AAGGTGACGCCGAAAGGCTTGCAAGGGATGAAGG 643
.|....||.||| || ||.||.|||||..||||.||..||||||||||||
BL03475___opu 595 TCGAAAACCGAA-GACAAAGTCACGCCTCAAGGATTAAAAGGGATGAAGG 643
BSNT_05116___ 644 AAGTTTCGTAA 654
||||.||.|||
BL03475___opu 644 AAGTATCATAA 654
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