Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05089 and BL03484

See Amino acid alignment / Visit BSNT_05089 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:12
# Commandline: needle
#    -asequence dna-align/BSNT_05089___smpB.1.5803.seq
#    -bsequence dna-align/BL03484___smpB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05089___smpB-BL03484___smpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05089___smpB-BL03484___smpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05089___smpB
# 2: BL03484___smpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 474
# Identity:     390/474 (82.3%)
# Similarity:   390/474 (82.3%)
# Gaps:           3/474 ( 0.6%)
# Score: 1615.0
# 
#
#=======================================

BSNT_05089___      1 ATGCCAAAAGGGTCAGGAAAAGTATTATCTCAAAATAAGAAAGCCAATCA     50
                     ||||||||.||...|||.||.||..|.||.||||||||.|||||.|||||
BL03484___smp      1 ATGCCAAAGGGAGAAGGGAAGGTTGTTTCCCAAAATAAAAAAGCAAATCA     50

BSNT_05089___     51 CGATTATTTTATAGAAGAAACCTATGAAACAGGCATCGTTCTGCAAGGAA    100
                     |||||||||.|||||||||||.||.||||||||||||||.||.|||||||
BL03484___smp     51 CGATTATTTCATAGAAGAAACATACGAAACAGGCATCGTGCTTCAAGGAA    100

BSNT_05089___    101 CCGAAATCAAATCGATTCGCGCCGGCCGCGTAAACCTTAAGGATTCCTTC    150
                     |.||||||||.||.|||||||||||.||.||.||..|.|||||..|.||.
BL03484___smp    101 CGGAAATCAAGTCCATTCGCGCCGGTCGGGTGAATTTAAAGGACGCGTTT    150

BSNT_05089___    151 GCCAAAATCGAACGGGGAGAAGTGTTTCTCCACAATATGCACGTCAGCCC    200
                     ||||||||.|||||.|||||||||||.|||||||||||||||.|||||||
BL03484___smp    151 GCCAAAATTGAACGCGGAGAAGTGTTCCTCCACAATATGCACATCAGCCC    200

BSNT_05089___    201 ATATGAGCAGGGAAACCGCTATAACCATGATCCGCTTCGGACAAGAAAGC    250
                     .|||||||||||.||||||||.||||||||||||.|.||.||.|||||||
BL03484___smp    201 GTATGAGCAGGGGAACCGCTACAACCATGATCCGTTGCGAACGAGAAAGC    250

BSNT_05089___    251 TGTTAATGCACCGCAAGGAGATTAATAAGCTGATCGGGTTAACAAAGGAA    300
                     |.||.||||||||||||.||||.||.||..|||||||.||.||.||.||.
BL03484___smp    251 TTTTGATGCACCGCAAGCAGATCAACAAATTGATCGGTTTGACGAAAGAG    300

BSNT_05089___    301 AAAGGCTATTCTCTCGTTCCGCTGAAGCTGTATTTAAAAAACGGCTTTGC    350
                     .|.||.|||||.|||||.|||||.|||.|.|||||.||.||||||||.||
BL03484___smp    301 CAGGGATATTCGCTCGTACCGCTCAAGATTTATTTGAAGAACGGCTTCGC    350

BSNT_05089___    351 CAAAGTGCTTCTCGGCCTTGGAAAAGGGAAGAAGAACTATGACAAACGGG    400
                     .||||||||.|||||.||.|||||||||||||||||.|..||||||||.|
BL03484___smp    351 AAAAGTGCTGCTCGGTCTCGGAAAAGGGAAGAAGAAGTTCGACAAACGCG    400

BSNT_05089___    401 AAGATCTGAAGCGCAAGGACGCGAAGCGGGAAATCGAAAGAGCGTTCAGA    450
                     ||||..||||||||||.|||||.||.||.||||||||||||||||||.|.
BL03484___smp    401 AAGACTTGAAGCGCAAAGACGCCAAACGCGAAATCGAAAGAGCGTTCCGC    450

BSNT_05089___    451 GACAGTCAAAAAGGCT---TCTAA    471
                     |||||.||||||||||   |||||
BL03484___smp    451 GACAGGCAAAAAGGCTTGATCTAA    474


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.