Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02837 and BL03510

See Amino acid alignment / Visit BSNT_02837 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:36
# Commandline: needle
#    -asequence dna-align/BSNT_02837.1.5803.seq
#    -bsequence dna-align/BL03510.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02837-BL03510.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02837-BL03510.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02837
# 2: BL03510
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 756
# Identity:     349/756 (46.2%)
# Similarity:   349/756 (46.2%)
# Gaps:         309/756 (40.9%)
# Score: 619.0
# 
#
#=======================================

BSNT_02837         1 ATGGCCCG-------------TACGGGATTAGATGGCATTAAATATGCTG     37
                     || |||.|             |||.|||||.||.|||.||||||.||| |
BL03510            1 AT-GCCTGAATACAGTTCAGTTACCGGATTGGAAGGCGTTAAATTTGC-G     48

BSNT_02837        38 ----------AGGTTGGTGAAGATG----------------AAAAAGCA-     60
                               ||      |||.|||                |||||..| 
BL03510           49 CCTTTAAAAAAG------GAAAATGGCTTTTATGTGGCTACAAAAATTAT     92

BSNT_02837        61 --ATT---------CAGATTAA---GAGTATGCCAGGTGCAAT-CGAATC     95
                       |||         || |||||   ||       |||| |||| ||    
BL03510           93 TGATTACCCTTACGCA-ATTAACGCGA-------AGGT-CAATACG----    129

BSNT_02837        96 GAAACTAGATGTACCATCCGAACTAGCAACTCTTTATGCTGATGAC----    141
                     ||||          ||||  ||| ||.||..|..|||||.||..||    
BL03510          130 GAAA----------CATC--AAC-AGAAAAGCAGTATGCAGACAACAAAC    166

BSNT_02837       142 -GGT--ATTTTTGCGGT---GAAAAGTTCCGGGGTTGGGGAGGCAAAATT    185
                      |||  | |.|.||.||   ||...|||||            .|||||||
BL03510          167 TGGTGGA-TATGGCTGTCACGACTGGTTCC------------ACAAAATT    203

BSNT_02837       186 AGAAC-TGAACCTCG----CTGACCTTACCACAGAAATGAAAAAGACACT    230
                     .||.| ||||...||    |||.|           ||||.|||       
BL03510          204 GGAGCTTGAAATGCGGGATCTGCC-----------AATGGAAA-------    235

BSNT_02837       231 TTTAGGTGTGAAGGTTGTGGATGGTATTGAAGA-----------------    263
                     |||.||.| |||  ||||  .|||.||.|||||                 
BL03510          236 TTTTGGAG-GAA--TTGT--TTGGGATAGAAGAAACAGACGGGATCTATA    280

BSNT_02837       264 -GTACCATAAAGA----TATGGAGCC--TCCTTACG-----TTTGTATCA    301
                      || .||.|||||    |||.|.|||  ...||.||     |||.||   
BL03510          281 TGT-TCAAAAAGAATGTTATCGCGCCATGGGTTGCGATGTCTTTCTA---    326

BSNT_02837       302 CGTGG------------CGGCAACG--TCACCATGACAAAGGTTATGTGT    337
                       |||            |||||| |  ||.|||||               
BL03510          327 --TGGGCCAAAAGCGAACGGCAA-GAATCGCCATG---------------    358

BSNT_02837       338 ATTACGCCTTGTTAAAAGG-GAAGTTCGGTCCCCCGTCTTC-------AG    379
                       ||.||.|.||.|||.|| |...|||         |||||       .|
BL03510          359 --TAGGCTTAGTGAAAGGGCGTTTTTC---------TCTTCCGGATGATG    397

BSNT_02837       380 AGGGGAAATCAAAAGAGGATAAGGTCGATTTTCAAACAG-----------    418
                     |..|||||.|||||||.||.|||...||||||||.||.|           
BL03510          398 AATGGAAAACAAAAGAAGAAAAGACTGATTTTCAGACGGTCAAACTTTCT    447

BSNT_02837       419 -----ATTCCATA-GAAGGGC-----AGTTCATGCCTCGGAA--ATT---    452
                          |||   || |.||.||     ||...|.||||...||  |||   
BL03510          448 GCTGAATT---TATGGAGCGCGAACAAGACAACGCCTATAAAGTATTGGC    494

BSNT_02837       453 ---TGACG--GGAATGTATTTCTGATTGG-------TTATGATCAAAATG    490
                        |||.|  |.|..|.|||||...||||       |||||    |||  
BL03510          495 TGATGAGGACGCACCGAATTTCAATTTGGACAAGTTTTATG----AAA--    538

BSNT_02837       491 AAGGGTTCACACTTGAGAAATTC-TATCAGCGTGCATATGGCATGTTGCC    539
                     |||.||      ||| |.|||.| |||.|      |.||         ||
BL03510          539 AAGTGT------TTG-GCAATGCTTATAA------AAAT---------CC    566

BSNT_02837       540 AGAC---GGC-ATGACAACAGAAGAAGTAAGTGCAGACTTAGGAAA----    581
                     .|||   ||| .|||.||.|    ||...||.|.||||.|.|||||    
BL03510          567 GGACTCAGGCTCTGATAATA----AATCCAGCGTAGACATTGGAAAGACA    612

BSNT_02837       582 --ATAA    585
                       ||||
BL03510          613 GTATAA    618


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