Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02265 and BL03530

See Amino acid alignment / Visit BSNT_02265 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_02265___ykrI.1.5803.seq
#    -bsequence dna-align/BL03530___ykrI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02265___ykrI-BL03530___ykrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02265___ykrI-BL03530___ykrI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02265___ykrI
# 2: BL03530___ykrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity:     755/1254 (60.2%)
# Similarity:   755/1254 (60.2%)
# Gaps:         270/1254 (21.5%)
# Score: 2097.0
# 
#
#=======================================

BSNT_02265___      1 ATGAGAAGAGGGATTATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT     50
                     |||||||||||.|||||.|||||.||||||||||||||||||||.|||||
BL03530___ykr      1 ATGAGAAGAGGAATTATTGTAGAAAAAAATAAAAAATTCGTCACATTGCT     50

BSNT_02265___     51 GACCCCTGACGGACAATTTTTAAAAGCCAAAAATGATCGACACAG-----     95
                     .||||||||||||||||||||||||||    ||.||.| |||.||     
BL03530___ykr     51 AACCCCTGACGGACAATTTTTAAAAGC----AAAGAGC-ACAGAGGAAGA     95

BSNT_02265___     96 CTATGAAATCGGAGAAGAAATCATGCTT---CCGAGTGAAACACGCATGG    142
                     .|||||||||||..|.|||||  |||||   |||.| ||.||..|.|||.
BL03530___ykr     96 TTATGAAATCGGTCAGGAAAT--TGCTTTTCCCGCG-GAGACGAGAATGT    142

BSNT_02265___    143 GCAGAAGG---GCCAGCTTTTTTGATTTTTTTAAACTGCGCCCTTTCAAA    189
                     ..||||||   ||..|||||||||||.|..||...||.||.||..|.|||
BL03530___ykr    143 CGAGAAGGCGTGCGGGCTTTTTTGATCTGCTTTCGCTCCGTCCGCTGAAA    192

BSNT_02265___    190 ATGGGGATTTTTACGATGACTGCTATTATGCTCTTTATTTTTATAGTTC-    238
                     ...||..|||||.|.||..|.||.||.|||||..|...|||.|| |.|| 
BL03530___ykr    193 GCCGGCGTTTTTTCAATCGCCGCGATCATGCTGCTCGCTTTCAT-GATCA    241

BSNT_02265___    239 TCCCCGTTTTTTCTAATAATAAGGCCTATGCGTATATGACAATCGATATC    288
                     ||||.|.|.|||..||.|||||.||.||.||.||.|||||.|||||||||
BL03530___ykr    242 TCCCTGATGTTTTAAACAATAAAGCATACGCCTACATGACGATCGATATC    291

BSNT_02265___    289 AATCCAAGCGTCGAAATGGCGTTAAACAGCGATTATGAAGTGATTGAACT    338
                     ||.||||||.|.|||.||.||.|.||||...|.|.||||||.||.||..|
BL03530___ykr    292 AACCCAAGCTTTGAATTGACGCTCAACAAAAACTGTGAAGTTATCGATTT    341

BSNT_02265___    339 GACGCCTCTAAACGATGAGGGACAGAAGGTCGTGAATG----ATATAGAT    384
                     |..|||.||.|||||.||.||   ||||| |.|.||||    .||||.|.
BL03530___ykr    342 GGTGCCGCTGAACGAGGATGG---GAAGG-CCTTAATGGATAGTATAAAA    387

BSNT_02265___    385 GATTGGGAGAAGACTGATTTTAAAAAGGTGATTGACGATATTATAACCGA    434
                     .|||||||.|||.||||.||||||.|.|||||....||.|||.|   |||
BL03530___ykr    388 AATTGGGAAAAGTCTGACTTTAAAGAAGTGATCAGTGAAATTGT---CGA    434

BSNT_02265___    435 CTGCAGTGAACA---CGGGTATGTAAAAAAATCGAAAGAAATATTGATTT    481
                     ...|||.||..|   |||.|||||.|...||||.||||||.|..|.||..
BL03530___ykr    435 AGACAGCGATAAGAGCGGTTATGTCACCGAATCAAAAGAAGTGCTTATCG    484

BSNT_02265___    482 CCACTGTTTATGAAAACACAGAAGACAATACATATAAAAAGGCTGTGA--    529
                     ||||.||.||.|||||||..|||||..|.||.|||   |||||   ||  
BL03530___ykr    485 CCACAGTATACGAAAACAATGAAGATGACACGTAT---AAGGC---GACG    528

BSNT_02265___    530 --AAAAACAGCTGA-----ATGATGTGACTGAAAAATATAAAACGA-CAT    571
                       ||||  ||| ||     |||||||..|..||||||     |||| || 
BL03530___ykr    529 GTAAAA--AGC-GAAATCGATGATGTAGCGAAAAAAT-----ACGAGCA-    569

BSNT_02265___    572 ACCGC-----------ATGGAATCTCTCGAGTCAGATATGCAAACGAGGG    610
                        ||           ||||||.|..|.||.|||||..|..|.|||.|.|
BL03530___ykr    570 ---GCAGAATTATAAGATGGAAGCGGTGGAATCAGACCTTGATACGCGTG    616

BSNT_02265___    611 AAAAAGCGAAGAAAGAAGGCGTCTCAACAGGCAGCTACATCAAATC----    656
                     .||||||..|.|||||||||.|||||||||||.|.||.|||...||    
BL03530___ykr    617 CAAAAGCCCAAAAAGAAGGCATCTCAACAGGCCGTTATATCCGTTCCCAC    666

BSNT_02265___    657 --AAATGAA-AAGAATGACAATAAAGATATAAAAGATGACTCCAGCAAAC    703
                       |.||||| .|||| |||||.||      .||||||||       ..||
BL03530___ykr    667 AAAGATGAATTAGAA-GACAAAAA------CAAAGATGA-------TGAC    702

BSNT_02265___    704 CATCCGGGGAAGAGGATCAAAAGAGTGATGAAAATGAGGATGAAAACACC    753
                     .||     |||.|..|  |||||| ||||.|||||.||||.||||||||.
BL03530___ykr    703 AAT-----GAAAATAA--AAAAGA-TGATCAAAATCAGGAAGAAAACACA    744

BSNT_02265___    754 GATCAAACTGACACCCAGGACAGCAAGC--------AAGGAGATAA---T    792
                     |...|||         |||  ||.||||        |||.||||.|   .
BL03530___ykr    745 GGAGAAA---------AGG--AGAAAGCTGTGAAAGAAGAAGATCAGCCG    783

BSNT_02265___    793 GAACAGCTGAATGATGCGGATTCCGGAGACCAGAAAGAAG-AGA-----A    836
                     |||||||      ||.|||||         .|.||||||| |||     |
BL03530___ykr    784 GAACAGC------ATACGGAT---------GATAAAGAAGCAGATACGGA    818

BSNT_02265___    837 AG------CGGATGAC----------CAGATTGATGAT-AGTGACAA--A    867
                     ||      ||||.|.|          |||| |||.||| |||..|||  .
BL03530___ykr    819 AGATCATCCGGACGGCGAAAAACCTTCAGA-TGAAGATCAGTCTCAACCT    867

BSNT_02265___    868 GATAAAAAAATAAAGGAATCAGATGAAAACACAAATACCGAAAAAGATGG    917
                     |||.||.||||   ||||..||                   |||||    
BL03530___ykr    868 GATCAAGAAAT---GGAAAAAG-------------------AAAAG----    891

BSNT_02265___    918 GGACCATGAG-CAAA---CCCCAATAC--AAGATCCTC---AAGATAAAG    958
                            ||| ||||   |||.|||||  ||.|.||||   ||.||||..
BL03530___ykr    892 -------GAGTCAAATTCCCCTAATACCAAAAACCCTCAGGAACATAACC    934

BSNT_02265___    959 GAAATGAAAATAACGG--CGCTGAC-----AAGGGCCAAAGCCAATATCA   1001
                     ..|||||.||..||||  .||.|||     ||||   ||.|||||.|  |
BL03530___ykr    935 ATAATGACAAAGACGGTCAGCAGACGGAGGAAGG---AACGCCAAAA--A    979

BSNT_02265___   1002 CAGGGACTGGAACAATGGTGAACAAG---GC----AAGAACCGTTCTTCG   1044
                     ..||..|.||..|||     |.||||   ||    ||..||| |.|||  
BL03530___ykr    980 GCGGTTCCGGTTCAA-----ATCAAGAGAGCTCTAAATCACC-TCCTT--   1021

BSNT_02265___   1045 TCCAGAAGG-GATAACG-CTTCAGACCGACGTAATCCAAACGGCTACAGC   1092
                     .|||.|||| ||.||.| ||||.||          |||||||        
BL03530___ykr   1022 ACCAAAAGGAGAAAAAGCCTTCTGA----------CCAAACG--------   1053

BSNT_02265___   1093 AGTGATAATAATTCAGCTCAAAATGAAGATTCGCCGAGTGCCCCCGGCGA   1142
                           ||||         ||.|.|||.||.|||||||.|..||||||||
BL03530___ykr   1054 ------AATA---------AACAAGAATATCCGCCGAGCGGGCCCGGCGA   1088

BSNT_02265___   1143 ATAA   1146
                     ||||
BL03530___ykr   1089 ATAA   1092


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