Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02269 and BL03531
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_02269___htpX.1.5803.seq
# -bsequence dna-align/BL03531___htpX.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02269___htpX-BL03531___htpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02269___htpX-BL03531___htpX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02269___htpX
# 2: BL03531___htpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 930
# Identity: 672/930 (72.3%)
# Similarity: 672/930 (72.3%)
# Gaps: 69/930 ( 7.4%)
# Score: 2370.0
#
#
#=======================================
BSNT_02269___ 1 ATGGCGAAAAGAATTTTTCTGTTTATTCTAACGAATATTTTGGTGCTTAC 50
||||..||||||||.|||||.|||.||.||.||||.||.||.||..||||
BL03531___htp 1 ATGGGAAAAAGAATCTTTCTCTTTCTTTTATCGAACATCTTAGTCATTAC 50
BSNT_02269___ 51 AACAATCGGGATCGT-------TTTGTCTGTTTTAAGCTCTGTTACAGGA 93
.||.|||||.||||| .||.||.||| |.||| |||||.
BL03531___htp 51 GACGATCGGTATCGTGCTTTCGATTATCGGTT-----CGCTG--ACAGGG 93
BSNT_02269___ 94 GTCGGGACGTACTTTACAGCTGATGGCGGTATCGATCCAATG--GCGCTT 141
||.||.|||||.||.||.|||.|.|||||.|||||| |.|| ||||||
BL03531___htp 94 GTAGGCACGTATTTCACGGCTAACGGCGGCATCGAT--ATTGTTGCGCTT 141
BSNT_02269___ 142 CTTGTGTTCAGTTTAGTCGTTGGGTTTGTCGGTTCCTTTACGT--CTCTT 189
||.||.||.|||..|||.||.||.||||||||.|||||||.|| |||||
BL03531___htp 142 CTCGTATTTAGTGCAGTTGTCGGTTTTGTCGGCTCCTTTATGTCGCTCTT 191
BSNT_02269___ 190 GCGATGTCCAGATGGATGGCAAAGACGATGATGGGCG-TCAGAGTGCTGA 238
||||||.|||||||||||.||.|.|..|||||||| |||| |||||||
BL03531___htp 192 --GATGTCAAGATGGATGGCGAAAATGGCGATGGGCGTTCAG-GTGCTGA 238
BSNT_02269___ 239 ATCCGAAAAAACACTCGCTCAGCTATGAGGAACAGCAATTGGTTGATCGT 288
||||..|.||.||..|||||||||||||.||||||||..|.|||||.||.
BL03531___htp 239 ATCCTGATAAGCAAACGCTCAGCTATGAAGAACAGCAGCTCGTTGACCGG 288
BSNT_02269___ 289 GTTCACAGAT-TAAG-----CCGCTCTGCCGGTTTAACGAAAATGCCGGA 332
|| || |||| ||||.|||||||..|.||.||.|||||.||
BL03531___htp 289 GT------ATATAAGCTGTCCCGCGCTGCCGGACTGACAAAGATGCCTGA 332
BSNT_02269___ 333 AGTCGGGATTTACCGTTCACCTGAAGTAAACGCGTTTGCGACTGGACCGT 382
||||||.||.|||..|||||..|||||.||.||.||||||||.||.||||
BL03531___htp 333 AGTCGGCATCTACAATTCACGCGAAGTGAATGCCTTTGCGACCGGGCCGT 382
BSNT_02269___ 383 CAAAACGCCGTTCACTTGTCGCAGTATCGTCAGGGCTGCTGGAGCAGATG 432
|.|||..|||.||.||||||||.||||||.|.||.||.||..||.|.|||
BL03531___htp 383 CTAAAAACCGCTCGCTTGTCGCTGTATCGACGGGCCTTCTTCAGGAAATG 432
BSNT_02269___ 433 GATGACGCAGCGGTTGAAGGTGTGCTTGCCCACGAGGTCGCGCATATCAC 482
|||||||..||.||.|||||.||.|||||||||||.||.||||||||..|
BL03531___htp 433 GATGACGACGCAGTGGAAGGCGTACTTGCCCACGAAGTGGCGCATATTGC 482
BSNT_02269___ 483 AAATGGTGATATGGTAACAATGACGCTTTTACAAGGTATCGTTAATACCT 532
|||.||.||||||||.||.||||||||..|.|||||.|||||.|||||.|
BL03531___htp 483 AAACGGCGATATGGTGACGATGACGCTCCTTCAAGGAATCGTCAATACGT 532
BSNT_02269___ 533 TTGTCGTCTTTTTATCGC--GTATCGCCGCTTGGATAGCAAGCCGTT--- 577
|.|| |.||||..|||| |.||.||.||.||| ||.|||
BL03531___htp 533 TCGT--TGTTTTCTTCGCAAGGATTGCGGCATGG-------GCTGTTTCA 573
BSNT_02269___ 578 ----TTGTCAAAGAAGATCTAGCGCCGATCGTTCATTTTATTGCAATGAT 623
|||||...|||||.||.||||||||||||||.|||||.||..|.||
BL03531___htp 574 CGCGTTGTCCGTGAAGAGCTGGCGCCGATCGTTCACTTTATCGCGGTCAT 623
BSNT_02269___ 624 TATTTTTCAGATTGTCTTTTCGATACTTGGCAGCCTGGTTGTGTTTGCGT 673
..|.||.||.|||||.||.||.||.||.||.|||||.||.||||||||||
BL03531___htp 624 CGTATTCCAAATTGTGTTCTCTATTCTCGGAAGCCTTGTCGTGTTTGCGT 673
BSNT_02269___ 674 ATTCACGCCATCGTGAATTCCATGCTGACAGGGGAGGAGCGGATCTTGCC 723
|.||.|||||.||.||||..|||||.||.||.||||||||.||.|||||.
BL03531___htp 674 ACTCCCGCCACCGCGAATATCATGCGGATAGAGGAGGAGCAGACCTTGCA 723
BSNT_02269___ 724 GGCAAGGACAAGATGATTCATGCGCTGCGGACGCTTAAAAGC--TATTCT 771
||||||||.|||||||||||.|||||.||..||||| .||| ||..||
BL03531___htp 724 GGCAAGGATAAGATGATTCACGCGCTCCGCTCGCTT--GAGCAGTACACT 771
BSNT_02269___ 772 TCCCGGATTATGGAAGACGATCAGACAGCTGTCCAAACGTTAAAGATTAA 821
||..|..|.| ||||.||.|||.||.||||...|||.|||||.||.||
BL03531___htp 772 TCAAGAGTCA---AAGAAGAACAGGCATCTGTTGCAACTTTAAAAATCAA 818
BSNT_02269___ 822 TGGCAAGAAGCGCTCTTCGCTTTTCTCTACTCACCCTGATTTAGATGAGC 871
.||.||.||||...|.|||||||||||.||.|||||||||||| |||
BL03531___htp 819 CGGGAAAAAGCATACATCGCTTTTCTCAACACACCCTGATTTA----AGC 864
BSNT_02269___ 872 ----GAATCAGGCGGCTGGAAGCTAAATAA 897
|||||.|.||.||||||||.||||||
BL03531___htp 865 GACAGAATCCGCCGTCTGGAAGCAAAATAA 894
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