Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02314 and BL03556

See Amino acid alignment / Visit BSNT_02314 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02314___ykvT.1.5803.seq
#    -bsequence dna-align/BL03556___ykvT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02314___ykvT-BL03556___ykvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02314___ykvT-BL03556___ykvT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02314___ykvT
# 2: BL03556___ykvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 679
# Identity:     424/679 (62.4%)
# Similarity:   424/679 (62.4%)
# Gaps:         119/679 (17.5%)
# Score: 1127.0
# 
#
#=======================================

BSNT_02314___      1 ATGACAACGAAATTCACTGCTCTGGCT--GTTTTTCTTCTTTGTTTCATG     48
                     ||||.|.|||||||..|||||||.|||  ||||||..||  ||..|..||
BL03556___ykv      1 ATGAAATCGAAATTTGCTGCTCTAGCTGCGTTTTTAATC--TGCATGCTG     48

BSNT_02314___     49 CCTGCAGCCAAAATTGAGCATACACAAGCT-TCACTACTGAGCGC-AAAG     96
                     ||.||.||.|.|||.||||||.|.|||||| ||| |..||..|.| |||.
BL03556___ykv     49 CCGGCGGCAAGAATCGAGCATGCTCAAGCTGTCA-TGTTGTTCTCGAAAA     97

BSNT_02314___     97 AAGACAAAACATGAA---GAA--GC-----GAAATGGCTTACACATATAG    136
                     |||| .|||||.|||   |||  ||     |||| |.||||.|||   ||
BL03556___ykv     98 AAGA-TAAACAGGAAATGGAACGGCTGATGGAAA-GCCTTAAACA---AG    142

BSNT_02314___    137 ATCGAAATACGAATGAATCTTTCCCTTCACTGTCTGCTGATAAGGACAAG    186
                     |...||||.|   || .|.||||||  .|.||.|.|.||         ||
BL03556___ykv    143 AAGAAAATCC---TG-CTTTTTCCC--AATTGACAGATG---------AG    177

BSNT_02314___    187 AAAATAACACCGATT-----AAG--------CTATCAGCACACACTGAAA    223
                     ||||       |.||     |||        ||.||||      |||||.
BL03556___ykv    178 AAAA-------GCTTCATTGAAGCCGCGCATCTGTCAG------CTGAAG    214

BSNT_02314___    224 AGAAAGAGAAAGATAAACCGGACAAAACAAATGATGAGAAAGAAAC----    269
                     ||.|.|||.|| |||.|           |.|.|.|||..||||.||    
BL03556___ykv    215 AGGAGGAGGAA-ATAGA-----------AGAAGCTGAAGAAGAGACGACT    252

BSNT_02314___    270 -AT-ATACACAGTCTGAAAAAGAGTTGCTGTCCCGTCTCGTTCACGCAGA    317
                      || .||||||....||||||||..|..|.||..|.||.||.|||||.||
BL03556___ykv    253 GATCTTACACATAAAGAAAAAGATCTTTTATCAAGGCTTGTACACGCCGA    302

BSNT_02314___    318 GGCCAAAGGAGAATCATATAAAGGCAAGGTCGCTGTAGCAAGCGTTGTAC    367
                     .||.|||||.||.||||.|.||||.||.||.|||||.||.|..||.||.|
BL03556___ykv    303 AGCGAAAGGCGAGTCATTTGAAGGAAAAGTGGCTGTCGCCAATGTCGTCC    352

BSNT_02314___    368 TGAACAGGACGGAGAAA-AAAG--GTTTTCCTGATA-CGATAAGAGGAGT    413
                     ||||..|   ||.|||| |.||  |.||||||||.| || |||.|.|.||
BL03556___ykv    353 TGAATCG---GGTGAAAGACAGCCGATTTCCTGACAGCG-TAAAAAGCGT    398

BSNT_02314___    414 TATTTATCAGAAAAACGCCTTTGAACCGGTCGCAAACGGGAGCAT---TA    460
                     .||.|||||.|.||||||.|||||.||.||...||||||.|||||   .|
BL03556___ykv    399 GATCTATCAAAGAAACGCTTTTGAGCCCGTTCTAAACGGCAGCATCGAGA    448

BSNT_02314___    461 ACCAAAAGCCTGATAAA----GAATCGATTGAAGCTGCCGAAGAAGCGCT    506
                     |  ||||||     |.|    |||||..|.|||||||..|||||||||  
BL03556___ykv    449 A--AAAAGC-----AGACCGCGAATCAGTGGAAGCTGTGGAAGAAGCG--    489

BSNT_02314___    507 GT-CCTCAAAA-AATAGAGAAACAGATGCCATATTCTTTTATAAT-CCGA    553
                     || ..|||||| ||.|.|||||||||.||..||||.||.|||||| ||||
BL03556___ykv    490 GTAGATCAAAATAAAAAAGAAACAGAAGCTTTATTTTTCTATAATCCCGA    539

BSNT_02314___    554 AAACAGCGTCAGATAATTGGATT----CGTTCAAGAAAAATCGTAGAA-A    598
                     .|.| ||.||.|||.|.||||||    ||    ||||||.|||| ||| .
BL03556___ykv    540 CATC-GCTTCTGATGACTGGATTAAAACG----AGAAAAGTCGT-GAAGC    583

BSNT_02314___    599 AAATCGGCAGACACGTTTTTGCCGTCTAA    627
                     ..|||||||..||.||.|||||..||||.
BL03556___ykv    584 GCATCGGCAATCATGTCTTTGCGATCTAG    612


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