Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02315 and BL03557
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02315___ykvU.1.5803.seq
# -bsequence dna-align/BL03557___ykvU.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02315___ykvU-BL03557___ykvU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02315___ykvU-BL03557___ykvU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02315___ykvU
# 2: BL03557___ykvU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1383
# Identity: 972/1383 (70.3%)
# Similarity: 972/1383 (70.3%)
# Gaps: 87/1383 ( 6.3%)
# Score: 3283.0
#
#
#=======================================
BSNT_02315___ 1 ATGAATCGATTTGTGAAAGGGATCATTCTTTTATCCATTGCCGCCTTTTT 50
|||||.||.|||||.|||||.|||.|||||.|.||..|.||.||.|||||
BL03557___ykv 1 ATGAACCGTTTTGTAAAAGGAATCGTTCTTCTTTCGCTAGCTGCTTTTTT 50
BSNT_02315___ 51 CGCTGAATGCCTTGAATTTGTCGTCAATATGATTTTGGCGCGGGAGCTTG 100
.||.|||||.||||||||.|||.||||.||||||.|.||.||||||||||
BL03557___ykv 51 TGCAGAATGTCTTGAATTCGTCATCAACATGATTCTTGCACGGGAGCTTG 100
BSNT_02315___ 101 GCGAGCATGGGATGGGGCTTTACATGAGTATTTTGCCCACGATCTTTTTA 150
||||||||||.||||||||.|||||||||.|||||||..|.||.|||||.
BL03557___ykv 101 GCGAGCATGGCATGGGGCTCTACATGAGTGTTTTGCCTTCCATTTTTTTG 150
BSNT_02315___ 151 ATTATTGTCATCGCGAGCCTGGAACTGCCGATATCCATTTCTAAATTCAT 200
.|..|.||.||.||||||||.||.|||||..||||.||.||.||.||.||
BL03557___ykv 151 GTCGTGGTGATTGCGAGCCTTGAGCTGCCCGTATCAATATCGAAGTTTAT 200
BSNT_02315___ 201 TGCCGAGTCAAATCCTAAGCTTCATGAAAGCATGCTGAGGCACGCTTTCA 250
.||||||||.||.||.|||||.||.|||||||||||||..||.||.||..
BL03557___ykv 201 CGCCGAGTCCAACCCGAAGCTGCACGAAAGCATGCTGAAACATGCATTGC 250
BSNT_02315___ 251 GAATGACAGCCATTTTTACTGCTTTTTCTACTGCTGCCGCTAGT----AT 296
|.|||||.||..|.|..||.|.|||.||.||.||.||||| ||| ||
BL03557___ykv 251 GGATGACTGCGGTCTGCACGGTTTTCTCCACGGCAGCCGC-AGTGATCAT 299
BSNT_02315___ 297 TGCGCTTCCGTTTATTCCGGTATTTGATACATACCACCCGTTTATTAAAG 346
| |||||.|||||||||||.||||||.|.||||||||..|.||.|.||
BL03557___ykv 300 T---CTTCCATTTATTCCGGTTTTTGATTCTTACCACCCTCTAATCAGAG 346
BSNT_02315___ 347 GGATTGTCATCGGCTTAATTCCTGTTGTCGCCTTTACTTCAATCGCCAGG 396
|..||||.|||||..|.||||||...||.||.||.||.||.|||||.||.
BL03557___ykv 347 GACTTGTGATCGGGATGATTCCTACGGTTGCATTCACATCGATCGCGAGA 396
BSNT_02315___ 397 GGCTACTTTATGGGTGTGCAGAAAATGGGGAAGATCGCAATTGCCAATGT 446
||||||||.|||||.||.|||.|||||||.||.|||||||..||.||||.
BL03557___ykv 397 GGCTACTTCATGGGCGTTCAGCAAATGGGTAAAATCGCAACGGCGAATGC 446
BSNT_02315___ 447 GCTGAAAAAAATCATCCAGCTCTTGTGCTTATTCCTCTTTTTTCAATGGT 496
..|||||||||||.|.||||||.|..||||.||..|.|||||||||||||
BL03557___ykv 447 CTTGAAAAAAATCTTTCAGCTCATCGGCTTGTTTTTATTTTTTCAATGGT 496
BSNT_02315___ 497 ACTCATTTGAATTGGACATGGCTGTGCTGATTTCCTTGTTTGTTCTAGTC 546
|.||.|||||||||||.|...||.|.||.|||||.||||||||.||.||.
BL03557___ykv 497 ATTCCTTTGAATTGGATACTTCTCTTCTCATTTCATTGTTTGTCCTCGTT 546
BSNT_02315___ 547 GTGAGTGATGTGGTCGTGCTTGTTTATTTATATTCACAATTTATCATGGC 596
|..|||||.|||||||||.||||||||||.|.|||.||.|||.|..|||.
BL03557___ykv 547 GCAAGTGAAGTGGTCGTGTTTGTTTATTTGTTTTCGCAGTTTGTTTTGGT 596
BSNT_02315___ 597 AAGGCGGGCGTTATCCGGCCA------GCAGCACATTCATTTGCGCGGAA 640
.|||||.| |||..|| ||||||.||.||.|||||..|||
BL03557___ykv 597 CAGGCGTG------CCGCTCAAAAAGGGCAGCAGATCCACTTGCGGAGAA 640
BSNT_02315___ 641 AGGATGTAAGGAAAAGACTGCTTGCTGTTTCAATTCCTACAACAGGACTG 690
|.|||||....|||.|.|||||..|||||||.||.||.||.||.||.|||
BL03557___ykv 641 ACGATGTTTTAAAACGCCTGCTCACTGTTTCGATCCCGACGACGGGGCTG 690
BSNT_02315___ 691 CGCATTTTTCATGCGGTTGTC-AATGCAATTGAACCCTTTTTAGTAAAAG 739
|||.|.||||||||.| ||.| |||||..|.|||||.|||||.||.||.|
BL03557___ykv 691 CGCGTGTTTCATGCTG-TGACAAATGCCGTCGAACCTTTTTTGGTGAAGG 739
BSNT_02315___ 740 GAGCTCTTTTGGCTGCGGGCGTTGCCGGGACAGCGGCGATCGATCAATAC 789
|..|.||..|.||.||.|||||..|..|.|||.||||.|||||.||.|.|
BL03557___ykv 740 GGACGCTGCTTGCCGCTGGCGTATCAAGAACATCGGCCATCGACCAGTTC 789
BSNT_02315___ 790 GGAATGCTGGCAGGAGTGGCTGTGACGATAGGGTCGTTCCCTGCTTTTAT 839
||.|||||..|.|||||.||..||||.||.||.|..||.||.||||||||
BL03557___ykv 790 GGCATGCTTTCGGGAGTTGCGATGACAATCGGCTTTTTTCCGGCTTTTAT 839
BSNT_02315___ 840 TGCCCATTCGTTAATGGTCGTCATGATACCGAGTATTTCGGAA------G 883
.||||||||..|.||||||||||||||.|||||.|||||.||| |
BL03557___ykv 840 CGCCCATTCACTGATGGTCGTCATGATCCCGAGCATTTCTGAAAGCTACG 889
BSNT_02315___ 884 CTTATGCACTTTCTCAGTATGACATCGTGTTAAAAAGGCTGAAGCAGTCG 933
||||.| ..||.||.||.|..|||.|.|||.||.|.||.|||.||
BL03557___ykv 890 CTTACG------GGCAATACGAAAGAGTGATCAAACGGATTAAACAGGCG 933
BSNT_02315___ 934 ATTTTCATTACATTAGGTTACGGTATACCTGCCGTCTGGGTCATGTTCCA 983
||.||.|||||..|...||||||.|||||..|||||..|||.||||..||
BL03557___ykv 934 ATCTTTATTACGCTGTTTTACGGCATACCGTCCGTCATGGTGATGTATCA 983
BSNT_02315___ 984 GTTTGCGGGACCTCTCACGCATTTGTTTTTTCACTC--TCCTGAA-GCGC 1030
.|||||.|..||.||.||.|||||.|||||..|.|| || || |||.
BL03557___ykv 984 CTTTGCAGAGCCGCTGACCCATTTATTTTTCGATTCGGTC---AAGGCGT 1030
BSNT_02315___ 1031 AGTATTACTTGCAGCTGTTGTGGCCTTACTTTCTCTTTCATCTGTTTGTC 1080
.||.||||.|..|..||||||||||.||.|||.|.||.||..|.||||..
BL03557___ykv 1031 CGTTTTACCTTAAAATGTTGTGGCCGTATTTTTTATTCCACTTTTTTGCG 1080
BSNT_02315___ 1081 ATGCCGCTGCAGGCGTGCTTAATCGGGATGGGCTTTGTGAAAGAGGCTTT 1130
|||||..|.|||||.||.||||||||.|||||.||.|..|||||.|||||
BL03557___ykv 1081 ATGCCTTTTCAGGCCTGTTTAATCGGAATGGGGTTGGCCAAAGATGCTTT 1130
BSNT_02315___ 1131 TTATCACAATGTATGGAGCCA------TATCGTTGCGCTAAGT---ATGA 1171
||||||.||.||.||| |||| ||||||| | ||||
BL03557___ykv 1131 TTATCATAACGTTTGG-GCCAGTGTCTTATCGTT--------TTTGATGA 1171
BSNT_02315___ 1172 TGTATGTACTGGGATCAATGGAGAATCTGCAAATGCTCGGGATTATCCTT 1221
|||||||.||.||.||.|||.|||.|.||||.|||...|||||.||.|||
BL03557___ykv 1172 TGTATGTTCTCGGGTCCATGCAGACTTTGCAGATGACGGGGATCATTCTT 1221
BSNT_02315___ 1222 GGAATGAACACTGGCATGATTCTTTTGACGAGC-CTGCACTATGCCACGA 1270
|..|||||.||.||.||||||.|..||||| || |||||.||||..||||
BL03557___ykv 1222 GCGATGAATACCGGTATGATTTTGCTGACG-GCGCTGCATTATGTGACGA 1270
BSNT_02315___ 1271 TCTGCAA--AGCATTGAAGGTATC-CGTATTCCTTACGGGAGGGA----- 1312
|.||||| ||| || ||..|| ||..||..|| ||
BL03557___ykv 1271 TTTGCAAGGAGC--TG--GGCGTCACGCTTTTTTT--------GACAAAC 1308
BSNT_02315___ 1313 ----CCAGAACGCCGCGAATTGAA---GGATGA 1338
||.||.|.|||.|||||||| .|.|||
BL03557___ykv 1309 AAATCCCGATCTCCGAGAATTGAAAGCCGCTGA 1341
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