Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02326 and BL03563

See Amino acid alignment / Visit BSNT_02326 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_02326___ykvZ.1.5803.seq
#    -bsequence dna-align/BL03563___ykvZ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02326___ykvZ-BL03563___ykvZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02326___ykvZ-BL03563___ykvZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02326___ykvZ
# 2: BL03563___ykvZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1020
# Identity:     686/1020 (67.3%)
# Similarity:   686/1020 (67.3%)
# Gaps:         102/1020 (10.0%)
# Score: 2147.0
# 
#
#=======================================

BSNT_02326___      1 ATGGCTAATATTAAAGACATTGCAGAAAAAGCCGGTGTCTCTGTTACAAC     50
                     |||||.|||||.|..||.||.||.|||...||.||.||.||..|.||.||
BL03563___ykv      1 ATGGCAAATATCAGGGAAATAGCTGAAGCGGCAGGGGTTTCCATCACGAC     50

BSNT_02326___     51 GGTTTCCCGAGTCATAAACAATCATCCATACGTCAGTGAAGACAAACGAA    100
                     .|||||..|.||..|.|||...||.||.||.||||..|||||.||.||..
BL03563___ykv     51 TGTTTCGAGGGTTCTCAACGGCCACCCGTATGTCAAAGAAGAAAAGCGTC    100

BSNT_02326___    101 AAAGAGTGTTTGAGGCAATGGAA----TCATTGGAGTACACGAGAAATAT    146
                     |||.|||..|||||.|.||.|||    ||    ||.||..|.||.|||||
BL03563___ykv    101 AAAAAGTTCTTGAGACGATTGAACGCCTC----GAATATGCAAGGAATAT    146

BSNT_02326___    147 TCACGCTGTACATTTGTCGAAAGGATTTTCAAACATGATTGGTGTTGTCT    196
                     .||.||.||.|||||.||.|||||.|||||.||||||||.||.|||||..
BL03563___ykv    147 GCATGCCGTTCATTTATCCAAAGGCTTTTCCAACATGATAGGCGTTGTGC    196

BSNT_02326___    197 TGCCAACGGTTAATCTGCCATATTTTGCAGAGCTGATTGCAGGAATAGCC    246
                     ||||.||..|.|..||.||.|||||.|..||||||.|.|.||||||.||.
BL03563___ykv    197 TGCCGACCATCAGCCTTCCTTATTTCGGCGAGCTGCTGGAAGGAATCGCT    246

BSNT_02326___    247 GATGCAGCCGC---GGAATCCGGGGTTCAC--CTCTCTTTATTCCAAACA    291
                     ||.|.|||.||   ||||   ||.||||||  .||.|||||  |||||||
BL03563___ykv    247 GAAGAAGCTGCGAAGGAA---GGCGTTCACTTTTCGCTTTA--CCAAACA    291

BSNT_02326___    292 AACTATGAGGTACAAAAAGAAATCTTTGCGCTGTCCCAATTAAAGCAGC-    340
                     ||.|||.|..|..||||||||||.|||||         |||..|||||| 
BL03563___ykv    292 AATTATCAATTGGAAAAAGAAATTTTTGC---------ATTGGAGCAGCT    332

BSNT_02326___    341 --------GCCAGGTTGACGGCCTGATTTTTTGCTCAAAGGCGCTTGCTG    382
                             |.|||||.||||||||||||||.||.|||||.|||.|..|.|
BL03563___ykv    333 GAAACAAAGACAGGTGGACGGCCTGATTTTCTGTTCAAAAGCGATGTCCG    382

BSNT_02326___    383 ATGAGAAACTCATGGAATGG---GA---GGGCCCGATTTTGCTTTGCCAG    426
                     ||||....||..||||.|||   ||   .||||||.|..|.||.||||||
BL03563___ykv    383 ATGAAGCGCTTTTGGACTGGCGTGAAACCGGCCCGTTCATCCTGTGCCAG    432

BSNT_02326___    427 AATTCAGATAATGC-----CCGCTTCCCAACCATCAGTATTCCTCACCAA    471
                     .|.||||     ||     .|.|||..||||..||||.|||||.||..||
BL03563___ykv    433 GACTCAG-----GCGAGCAGCACTTTGCAACGGTCAGCATTCCGCATAAA    477

BSNT_02326___    472 GAAGCATTTCGGAAC--GGCTTGGACTATTTAATTGCCAAAGGGCACAAA    519
                     ||||||||..|  ||  ||.|||||.|.||||||||..||||||||||.|
BL03563___ykv    478 GAAGCATTCAG--ACTTGGATTGGATTTTTTAATTGAAAAAGGGCACACA    525

BSNT_02326___    520 AAAATAGCCATCTGTTTGGCAAGAAAAAAAGGCATGAACAGTCATTTTCG    569
                     |||||.||.||..||||||||||.|||||.|||||||||||.||||||||
BL03563___ykv    526 AAAATCGCGATTGGTTTGGCAAGGAAAAACGGCATGAACAGCCATTTTCG    575

BSNT_02326___    570 AATCAAAGCCTACAAAGAGGCATTGGAAGAGATCGGCGAGGCATTTCGTG    619
                     ..||||.||.|||||.||.||.||||..|.||||||.|||.|.|..||.|
BL03563___ykv    576 CCTCAAGGCATACAAGGAAGCTTTGGCCGCGATCGGGGAGCCTTACCGGG    625

BSNT_02326___    620 AAGACTGGGTAATTGAGAAAGCGATTACAATCAATGATGGG--AAGGCGC    667
                     ||||.||||||.|||||....||.|.|||||.|..||.|||  ||..|..
BL03563___ykv    626 AAGAGTGGGTATTTGAGCGGTCGCTGACAATTACCGACGGGCAAAAACTG    675

BSNT_02326___    668 TTTTTCATAAATGGAAAACG-TGGAAGGAAAAGCCGACGGCTATTTTTGT    716
                     ||.|.|  .||||||||..| ||| ||||.||||||||||||.|||||||
BL03563___ykv    676 TTCTCC--GAATGGAAAGGGATGG-AGGAGAAGCCGACGGCTGTTTTTGT    722

BSNT_02326___    717 TGCCAATGACCAAGTCTCAGCAGGGCTTTTTCTTGAAGCAAAGAACCAGC    766
                     .||.||.||||||||.|||||.||..|||||||||||||      .||||
BL03563___ykv    723 CGCAAACGACCAAGTATCAGCCGGTATTTTTCTTGAAGC------GCAGC    766

BSNT_02326___    767 GG------GTG--TCAGTACCGGATGAG-CTTGCAATCTTAAGCGTTGAT    807
                     ||      |||  | |.|.|||||  || ||.||.||.||||||..|||.
BL03563___ykv    767 GGCATCAAGTGGAT-ATTCCCGGA--AGCCTCGCTATTTTAAGCTGTGAC    813

BSNT_02326___    808 AACCA--CGAAATCAGCCAAGCGCTTGGAATCACAACGATCGATATTCAG    855
                     |||||  ||  ||||||.|||.|||.||.||..||||.||.||.||..|.
BL03563___ykv    814 AACCAGCCG--ATCAGCGAAGTGCTCGGCATTTCAACAATTGAAATCAAT    861

BSNT_02326___    856 ACAAGGGAAATGGGAAAGCAGGCATTT-GCCATACTGGAAAAAAGAATTC    904
                     |.||.|||||||||.||||..||.||| ||| |.|||.||||||||||..
BL03563___ykv    862 ATAAAGGAAATGGGGAAGCGCGCGTTTCGCC-TTCTGCAAAAAAGAATCG    910

BSNT_02326___    905 AAGGACAGCCGATTGAAAGGAAA--------GTTCTGGATTACCGTCTCA    946
                     ..||  .||||   |...|||||        ||||   .||||...||.|
BL03563___ykv    911 GCGG--CGCCG---GGCCGGAAAAACTGACTGTTC---CTTACAAGCTGA    952

BSNT_02326___    947 TCGAAAGATCGACTGTTTAG    966
                     ||.||||..|||||||.||.
BL03563___ykv    953 TCAAAAGGGCGACTGTGTAA    972


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