Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02335 and BL03572

See Amino acid alignment / Visit BSNT_02335 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_02335___mcpC.1.5803.seq
#    -bsequence dna-align/BL03572___mcpC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02335___mcpC-BL03572___mcpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02335___mcpC-BL03572___mcpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02335___mcpC
# 2: BL03572___mcpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2119
# Identity:    1371/2119 (64.7%)
# Similarity:  1371/2119 (64.7%)
# Gaps:         302/2119 (14.3%)
# Score: 3979.5
# 
#
#=======================================

BSNT_02335___      1 TTGTTTAAAAAACTTCACATGAAGATTGCTGTTTTTGTTTC---------     41
                     ||||||||||||||.||..|.||.|||||.|..||||||.|         
BL03572___mcp      1 TTGTTTAAAAAACTGCATGTCAAAATTGCCGGATTTGTTGCCGTCCTGCT     50

BSNT_02335___     42 GATTAT----GTTAATCGTC--ACAGTTGTTCTTTTAATGCT-GTCTTCT     84
                     |.||.|    ||| ||||||  ||||||            || |.|..|.
BL03572___mcp     51 GGTTTTGACGGTT-ATCGTCCTACAGTT------------CTCGACAACA     87

BSNT_02335___     85 TATTTGACGCTAAAACCGATGATTACAGAGGATG-GGAAAAATACAACTC    133
                     .||||   |.|.|||.|||||.||   ||.|||| ||.||||   .|.||
BL03572___mcp     88 CATTT---GTTGAAATCGATGCTT---GAAGATGAGGCAAAA---GAATC    128

BSNT_02335___    134 AAAACGTGACGCAG----------TCACTTGAACAAAATATTGAATTGCA    173
                       |||||   .|||          |||.||.||..|||||||||..|.||
BL03572___mcp    129 --AACGT---CCAGCCTCCTCGGTTCAATTAAAAGAAATATTGAGCTTCA    173

BSNT_02335___    174 ATTA-AAGAGTTATGCCATTTCGTT--ATC----AAGATTGGCTAATGGG    216
                     |||| ||.| .||.|..|||||.||  |||    |||      |.||||.
BL03572___mcp    174 ATTAGAACA-CTACGAGATTTCTTTGAATCGTATAAG------TGATGGA    216

BSNT_02335___    217 GAATTAACGCATACATTTGTA----ACG-----AAACCAAGTA-AAGAAG    256
                     |||.|..|.||..||||..||    |||     ||...||.|| ||.|| 
BL03572___mcp    217 GAAATGGCTCACTCATTCTTAAAAGACGGGGATAATAAAATTATAAAAA-    265

BSNT_02335___    257 TTGCTCGGCTGTTTC-ACGATGACATT-AAGCAAATCAAAGATAACGATG    304
                         |||      || |.||||| ||| ||.|||.|.|||||.||..|||
BL03572___mcp    266 ----TCG------TCAATGATGA-ATTAAAACAATTAAAAGAAAAAAATG    304

BSNT_02335___    305 ATTATGTTGCGA--TGGCTTACATAGGCACCGCAAAAAAA----GAAATG    348
                     |.|||||  |.|  |.|||||.||.|||||    ||||||    ||||||
BL03572___mcp    305 AGTATGT--CAATTTAGCTTATATCGGCAC----AAAAAAGAAGGAAATG    348

BSNT_02335___    349 TTTACATATCCAAAAGCGGATTTCGCTGAGGATTATGATCCAGCATCAAG    398
                     |||||||.|||.|||.||...||.|.|||.||||||.||||.||...|||
BL03572___mcp    349 TTTACATTTCCGAAAACGACCTTTGATGATGATTATAATCCGGCTGAAAG    398

BSNT_02335___    399 ACCATGGTATAAGCTTGCAGCTG---AAACCCCGGATCAAGTTGTTTGGA    445
                     .||||||||||.|   .||||||   ||||.||.||..||||.|||||||
BL03572___mcp    399 GCCATGGTATACG---TCAGCTGCAAAAACACCCGACAAAGTCGTTTGGA    445

BSNT_02335___    446 CGGAACCTTATAAAGATGTCGTGACAGGAGACATGATTGTTACTGCATCG    495
                     ||||||||||.|||||||..||..|.|||||.||||..||||||||..|.
BL03572___mcp    446 CGGAACCTTACAAAGATGCGGTTTCCGGAGATATGACAGTTACTGCGGCA    495

BSNT_02335___    496 AAAGCGATCTTAGACGGGCAA----AAAG-TGATAGGGGTTGCCAGCTAT    540
                     |||||.|||.|    .|.|||    |||| ||| |||.||||.||| |||
BL03572___mcp    496 AAAGCCATCGT----CGTCAATAATAAAGTTGA-AGGCGTTGTCAG-TAT    539

BSNT_02335___    541 -GACTTG-----AAACTCTCTGCTATCCAGAGTATGGTCAATAAACAAAA    584
                      ||||||     .||.||..||  |.|.|.|.||   ||.|.||.|||||
BL03572___mcp    540 AGACTTGTCATTGAATTCATTG--AACAAAATTA---TCGAAAATCAAAA    584

BSNT_02335___    585 GGTGCCTTACAATGGATTTGCCT---TTTTAG-CTGATACGAGCGG-CAA    629
                     |.|||||||..|.||.|..||.|   ||||.| |..|.|||   || |||
BL03572___mcp    585 GATGCCTTATGACGGCTACGCATTTATTTTGGACCAAAACG---GGACAA    631

BSNT_02335___    630 T-CTTTTAGCCCATCCGTCAAATCAAGGAAAAAATATATCAAAGGATCAA    678
                     | |   |.|||||.||||||||.||.||..|..|||||||.||.|||.||
BL03572___mcp    632 TGC---TCGCCCACCCGTCAAAACAGGGCGACGATATATCGAATGATAAA    678

BSNT_02335___    679 ACA---CTGCAAACCATC---GCATCCGAGAAAAAAGGGATACAAGATGT    722
                     |||   |.|.|   ||||   .||||    ||||.|.|||..|||    .
BL03572___mcp    679 ACATATCGGGA---CATCCCGTCATC----AAAAGACGGAATCAA----A    717

BSNT_02335___    723 GAATGGAAAAATGGTTGTG------TACCAAACGATTGGCGAAACGGGCT    766
                     |.|.|.|||.|| ..||||      ||.||.||..|.||||..|||||||
BL03572___mcp    718 GTAGGCAAAGAT-ACTGTGATCGCTTATCAGACTGTCGGCGGTACGGGCT    766

BSNT_02335___    767 GGAAGGTCGGAACGCAATTTGATAC--CGATCAATTAATGTGGATTTCAG    814
                     ||||.|||||.|||||.||.||.||  |||  |..|.||||||.|..|..
BL03572___mcp    767 GGAAAGTCGGTACGCAGTTCGACACGGCGA--AGCTGATGTGGGTCGCGC    814

BSNT_02335___    815 ATAAAATGAATCGGGCAAA----TCTTTGGAT-------ATCATTGCT--    851
                     |..|||||||     ||||    ||.||  ||       |||||||||  
BL03572___mcp    815 AGGAAATGAA-----CAAAATGGTCATT--ATCGTTTCAATCATTGCTCT    857

BSNT_02335___    852 ---TGCGCTTATCATAACAATTATTCTCAGCTACTTCCTGGCCAAAACGA    898
                        .|||         .|.||.|||.|.|||||.|||.|.||||||||||
BL03572___mcp    858 GGCAGCG---------GCGATCATTTTAAGCTATTTCGTTGCCAAAACGA    898

BSNT_02335___    899 TAACCGGTCCGATACAGCAGCTGATCGCAAAAACGAAAGCTGTTTCCGCA    948
                     |.||.||.|||||..||||||||||.||.|||||.|||||.||..|.|..
BL03572___mcp    899 TCACAGGCCCGATTAAGCAGCTGATTGCCAAAACAAAAGCAGTCGCTGGC    948

BSNT_02335___    949 GGCGATTTAACAGTGC-----GC-GCGGAATCAAAATCTAAGGATGAAGT    992
                     ||||||||.||.||.|     || ||.|..||||||      ||||||.|
BL03572___mcp    949 GGCGATTTGACGGTCCAAACAGCAGCTGCCTCAAAA------GATGAAAT    992

BSNT_02335___    993 CGGTATTTTAACAAGAGATTTCAATCTGATGGTTGAAAATATGAAGGAAA   1042
                     ||||||.||.||||.|||.||.||...||||||.|||.|||||||.||||
BL03572___mcp    993 CGGTATATTGACAAAAGACTTTAACAAGATGGTCGAACATATGAAAGAAA   1042

BSNT_02335___   1043 TGGTTGAGCAAGTGAGACTC-TCTTCAGGGAAAGTATCTGACACCTCTGA   1091
                     ||.|||.||||||.||| || ||.||.||.||||||||.||.||..|.||
BL03572___mcp   1043 TGATTGTGCAAGTCAGA-TCATCGTCCGGAAAAGTATCGGATACGACCGA   1091

BSNT_02335___   1092 ACAACTAACGGCTGTCTCTGCCGAAAC---TAATGAAACAAGCGGACAAA   1138
                     .|||.|||..|||||.||.|..||.||   |..||   |.||||...|||
BL03572___mcp   1092 TCAATTAAGCGCTGTTTCAGAAGAGACGGTTTCTG---CGAGCGATGAAA   1138

BSNT_02335___   1139 TTGCAAAAGCGATTGAAGAAGTAGCCGCAGGAGCATCGGAACAGGCTTCT   1188
                     |.||.|||||.||.||||||||.||..||||.||..|.||||||||..||
BL03572___mcp   1139 TCGCCAAAGCAATCGAAGAAGTGGCGACAGGCGCGACTGAACAGGCGGCT   1188

BSNT_02335___   1189 GAAGTTGAAACCATTAATGAAAAATCGGAAAGCCTGTCAACGAAAATCAG   1238
                     ||.||.||||...|.||||||.||||.|||.|.|||||....|||||.|.
BL03572___mcp   1189 GAGGTCGAAAATGTCAATGAACAATCCGAACGGCTGTCTGTCAAAATTAA   1238

BSNT_02335___   1239 GCAAATCGCTGAGGAGGCAGGCGGAATTAAAGAACGTTCAAAATCGTCCG   1288
                     ..||||||...|..|.||.|.|.|.||.||..|||.|||.|.|.|.||.|
BL03572___mcp   1239 AGAAATCGAACATCATGCCGACAGCATCAAGAAACTTTCGAGAACATCAG   1288

BSNT_02335___   1289 AGGATGCAAGCTATAAAGGACTTGACGCGCTCGGCCAGCTGCTGATG--A   1336
                     |.||.||||||||||.||||.|.||.||.|||||.||||||||  ||  |
BL03572___mcp   1289 AAGAAGCAAGCTATACAGGAATCGATGCCCTCGGGCAGCTGCT--TGCAA   1336

BSNT_02335___   1337 AATCAAACGAAGCCAATATGGAAACGAAAAAGGTTGAAACGATGCT----   1382
                     |.|||||.|||||.||...|||.||.||.||.||.|||...|||||    
BL03572___mcp   1337 AGTCAAATGAAGCAAACTCGGAGACAAAGAAAGTGGAACATATGCTATTC   1386

BSNT_02335___   1383 --GCTGGATTTGGAAAATCAAACTAAGAATATTGAAGAAGTCGTTACAGC   1430
                       |||.||   .||||   ||||.||.||.||||||||.||.||||||||
BL03572___mcp   1387 CAGCTTGA---AGAAA---AAACGAAAAACATTGAAGACGTTGTTACAGC   1430

BSNT_02335___   1431 GATTTCAAACATATCTGATCAAACCAACTTGCTTGCCTTAAATGCCAGTA   1480
                     .||.||....||.||||||||.||.|||.|||||||..|.||.|||||.|
BL03572___mcp   1431 CATCTCGGCGATCTCTGATCAGACAAACCTGCTTGCTCTGAACGCCAGCA   1480

BSNT_02335___   1481 TTGAGGCAGCCAGAGCCGGAGAAAGCGGGCGCGGTTTTGCCGTCGTAGCC   1530
                     ||||.||.|||.|.||||||||||||||.|||||||||||.||.||.||.
BL03572___mcp   1481 TTGAAGCGGCCCGTGCCGGAGAAAGCGGACGCGGTTTTGCGGTAGTTGCA   1530

BSNT_02335___   1531 GATGAAGTGCGGAAGTTAGCTGAGCAATCAGCCCTTTCTACAAAGCATAT   1580
                     ||.||.|||.|.|||.|.|||||.|||||.||..|||||.||.||||.||
BL03572___mcp   1531 GAAGAGGTGAGAAAGCTTGCTGAACAATCGGCGGTTTCTTCACAGCACAT   1580

BSNT_02335___   1581 CAGCGAGACTGTGAAGCTTATCCAGCTTGAGACAAAAGAGGCC-TCTCAC   1629
                     |||.||.||.||.||.|..||.|||.|.||.||.|||||.||| |.||| 
BL03572___mcp   1581 CAGTGAAACGGTCAAACAGATTCAGATGGAAACGAAAGAAGCCGTTTCA-   1629

BSNT_02335___   1630 GCGATGGTTGAGGCAAGCAGAATGAATGATGAACAAAA--CAGTGCCATT   1677
                     ||||||...||.|||||||..||||||||.|..|||||  .|.||  |||
BL03572___mcp   1630 GCGATGACAGAAGCAAGCAAGATGAATGAAGTGCAAAATGGAATG--ATT   1677

BSNT_02335___   1678 CACGAAACTGGAGAGG----TATTAAATACGATAACTGCAGAAATGCAGT   1723
                     ||||||||.||.||.|    .|..|||    ||.|||||.|||||||||.
BL03572___mcp   1678 CACGAAACAGGTGAAGCGCTCAGCAAA----ATTACTGCTGAAATGCAGG   1723

BSNT_02335___   1724 CACTGGTACAAGGT--ATTGATCACATTTACGCGGAAAT-TCAAAGA-AT   1769
                     |.||.|| ||| .|  |||||.||||||||..|.||||| ||  .|| ||
BL03572___mcp   1724 CGCTCGT-CAA-CTCAATTGACCACATTTATTCTGAAATCTC--GGATAT   1769

BSNT_02335___   1770 GAGTGAAGAACAGC-------TTGCGATTTCTGAAGCTATTCAAAGCATT   1812
                     |||.|.|||.||||       .|.|||||       |.|||||.||||||
BL03572___mcp   1770 GAGCGGAGAGCAGCAAAAAATGTCCGATT-------CGATTCAGAGCATT   1812

BSNT_02335___   1813 TCAGCCATATCACAGGAATCAG-CTGCCGCAGCAGAGGAA---GTGAACG   1858
                     ||||||||.||.|||    ||| |||||||.||.|.||||   ||.|.||
BL03572___mcp   1813 TCAGCCATTTCCCAG----CAGTCTGCCGCGGCTGCGGAAGAGGTCAGCG   1858

BSNT_02335___   1859 CATCAACCGATGAACAGCTTGTCA-CCCTTGATAAAG--TCAAACACTCA   1905
                     |.||..||.|.||.|||| ||.|| |.||.|  ||||  ||..|.|.||.
BL03572___mcp   1859 CTTCGGCCAACGAGCAGC-TGACAGCGCTGG--AAAGCATCGCAAAATCG   1905

BSNT_02335___   1906 ACGGAAACACTAAAACATGCAAGCCAAGAACTTATGAACA------CAAT   1949
                     .|.|||.|.||.|...|.||.|.||||||| ||||.|| |      ||||
BL03572___mcp   1906 GCTGAAGCGCTGAGCGAGGCCAACCAAGAA-TTATTAA-ATGCGATCAAT   1953

BSNT_02335___   1950 TGCAAAATTCACATTGTAA   1968
                         ||.||.|...|||||
BL03572___mcp   1954 ----AAGTTTAACGTGTAA   1968


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