Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02340 and BL03575

See Amino acid alignment / Visit BSNT_02340 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_02340___ykuA.1.5803.seq
#    -bsequence dna-align/BL03575___pbpH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02340___ykuA-BL03575___pbpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02340___ykuA-BL03575___pbpH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02340___ykuA
# 2: BL03575___pbpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2267
# Identity:    1449/2267 (63.9%)
# Similarity:  1449/2267 (63.9%)
# Gaps:         304/2267 (13.4%)
# Score: 4324.5
# 
#
#=======================================

BSNT_02340___      1 GTGACTGAA----ATAGGACGTGAACC------AAAGAAAAAGAGCA---     37
                     |||||.|||    |    ||.|||.||      ||..||||||||||   
BL03575___pbp      1 GTGACAGAATCTCA----ACATGATCCGGCTGAAATCAAAAAGAGCAGGC     46

BSNT_02340___     38 ----------AAGGAAACAGAGCAATCAGAATGAACCTTTTTTTCCTAGC     77
                               |.||   |.||.|||.|.|.|     |||.|||.|   |.
BL03575___pbp     47 GTTCGCGTTTATGG---CGGATCAACCTGTA-----CTTCTTTGC---GG     85

BSNT_02340___     78 TGT---CTTTGTTCTATTCACTGCATTAATTTTTAAGCTCGGGGTTGTTC    124
                     |||   |||||     |||.||||..|.|||.|.|||||.||..|.||.|
BL03575___pbp     86 TGTTCACTTTG-----TTCGCTGCGCTGATTGTCAAGCTGGGCCTCGTGC    130

BSNT_02340___    125 AAATTGTTGAAGGCGAACAGCATGAAGAAGACGCTGAGAAATCAAATGCA    174
                     ||||.||..|.||.||...|.||||..|.||.|||..||||.|..|.||.
BL03575___pbp    131 AAATCGTCAATGGAGAGGCGTATGAGCAGGAAGCTTCGAAAACCGAGGCG    180

BSNT_02340___    175 AAAACAGCTTACTATCCTGCGCCTCGCGGGAAGATGTACGACAGAAATCA    224
                     ||||..||.|..||.||.||.||.||.||.||.|||||.||||||.|...
BL03575___pbp    181 AAAATTGCGTCATACCCGGCACCGCGGGGTAAAATGTATGACAGATACGG    230

BSNT_02340___    225 GAAAGTTGCTGTCGACAACCAGAGCGTTCCAGAAATTGTGTATGTATCAA    274
                     |...||.|.||||||||||||.||||||||.|..||            .|
BL03575___pbp    231 GCGGGTGGTTGTCGACAACCAAAGCGTTCCCGCGAT------------CA    268

BSNT_02340___    275 CAT------------CTAGCACAAAAACAGAAGATAAAATCAAAACAGCG    312
                     |||            |||||||||||||.||.||.|||||||..|||||.
BL03575___pbp    269 CATATACGATGATGACTAGCACAAAAACGGAGGAAAAAATCAGCACAGCC    318

BSNT_02340___    313 AAGCGGCTTGCTTCTTTCATTCATATTGATAC--CGAATTTTTGAAGGAA    360
                     ||....||.||....||.||..||||.|||||  ||  |||.||||.||.
BL03575___pbp    319 AAAAAACTCGCAGAATTGATCGATATCGATACTTCG--TTTCTGAAAGAG    366

BSNT_02340___    361 AGGGATCTTCGTGATTACTGGATCG-CAGCTCATCCGAAAAAAGCCGCCG    409
                     ||.|||||....|||||||||.|.| ||| .||.|||||||||||.||.|
BL03575___pbp    367 AGAGATCTGAAAGATTACTGGCTTGCCAG-ACACCCGAAAAAAGCTGCTG    415

BSNT_02340___    410 CTCTGCTTAAGGA-ATC-AGAAAGC-----AATCTGAAAGGAGACCAGGC    452
                     |.||.||.||.|| |.| |||||.|     |.|||       ||.||..|
BL03575___pbp    416 CACTTCTGAAAGACAGCGAGAAAACCCTCAAGTCT-------GATCAAAC    458

BSNT_02340___    453 TTACAAGCTTCAAATAGAGCGTGTTCCGGATCAAGA-ATTAAAG-GCTAT    500
                     .|||||||||||..|.||.||.|||||||...|||| ||.|||| |||  
BL03575___pbp    459 ATACAAGCTTCAGGTGGACCGCGTTCCGGCGGAAGAGATCAAAGCGCT--    506

BSNT_02340___    501 TCAGCAAGATGACGAAGAAATG----GAAACT-GCTGCGATATATACAAG    545
                        |.||.|.|||.|||  |||    .|||.| ||.|||||.|..|.|||
BL03575___pbp    507 ---GGAAAAGGACAAAG--ATGAGCTTAAAGTCGCAGCGATTTTCAGAAG    551

BSNT_02340___    546 GTTTTCAAGCGGAAATGCTTACGAACCTCAAATCGTAAAGGCAATGAATC    595
                     .|||||..||||..||||.||.||.||.||||||||.|||||.||||..|
BL03575___pbp    552 ATTTTCTGGCGGCTATGCGTATGAGCCGCAAATCGTCAAGGCGATGAGCC    601

BSNT_02340___    596 CAAATAAGAGCAATAGCAATGGAAAAAACGGAGC---GCTGCTTGATGAG    642
                     |.||       ||..||  .||.|||||||..||   |||.|||||||||
BL03575___pbp    602 CGAA-------AACCGC--GGGGAAAAACGATGCGCAGCTCCTTGATGAG    642

BSNT_02340___    643 AAGAAAAACTCCTCGCAAA--------GACCAAAAAATGACTTAACATAT    684
                     |||    .||.||   |||        |.||    ||.||.||.||.|||
BL03575___pbp    643 AAG----GCTTCT---AAACAGATGCCGGCC----AACGATTTGACGTAT    681

BSNT_02340___    685 GATGAAATTTCCATTGTTTCTGAGCATTTAGAAGAACTTCCGGGAATCGA    734
                     ||.|||.|.||....|||||.||||||.|.||.|||||.||.||..||||
BL03575___pbp    682 GAGGAAGTCTCACGCGTTTCCGAGCATCTTGAGGAACTGCCCGGCGTCGA    731

BSNT_02340___    735 TATCGTAAACGATTGGACACGAAAATATCCTTATGACAAAACCCTTTATT    784
                     ..||.|.|..||.|||||..|.||||||||||||||.|||||.||.||.|
BL03575___pbp    732 CGTCATCATGGACTGGACCAGGAAATATCCTTATGAAAAAACGCTCTACT    781

BSNT_02340___    785 CTGTTTTCGGGGGCGTCACGACACCTGATCAGGGCCTGCTGAGCGACCGG    834
                     |..|||||||.||||||||.||.|||||.||.||.||..|.|..||||||
BL03575___pbp    782 CCATTTTCGGAGGCGTCACAACGCCTGAACAAGGGCTTATCAAGGACCGG    831

BSNT_02340___    835 AAAGATTTCTACTTAACAAGAGGCTATGCGAATAATGACAGGGTGGGAAA    884
                     .||||.||.|||.|.|||||.||.|||||....||||||||.||||||||
BL03575___pbp    832 GAAGACTTTTACCTGACAAGGGGATATGCCCGGAATGACAGAGTGGGAAA    881

BSNT_02340___    885 AAGTTATTTAGAGTATCAATATGAAGAATATTTAAATTCGCATAAAGAAA    934
                     |||.|||.|.|||||||||||||||||||||||||||.||.|.||||..|
BL03575___pbp    882 AAGCTATCTCGAGTATCAATATGAAGAATATTTAAATCCGAAAAAAGCGA    931

BSNT_02340___    935 AAGTGGAATACGTA--GAAGATAATAAAGGAAATGTCGTCAGCCAAAAAA    982
                     ||||..||||  ||  |||.|...|..||||||.||..|||||||..|||
BL03575___pbp    932 AAGTCCAATA--TACCGAAAACCGTTCAGGAAAGGTTATCAGCCAGGAAA    979

BSNT_02340___    983 CCATTGATAAGGGCAGCAGGGGATACGATCTTCAGCTTTCTTTTGACATG   1032
                     |..|||||.|.||.||..|.||.||||||||.|||||..|.||.||||||
BL03575___pbp    980 CGGTTGATGAAGGAAGACGCGGCTACGATCTGCAGCTGACGTTCGACATG   1029

BSNT_02340___   1033 GAGCTTCAGGCAAAG---GTAGAAAAGATCATTGAAGAAGAAG--TAAGA   1077
                     |||||.||   ||||   ||.|||.||...||.|||| ||.||  |||.|
BL03575___pbp   1030 GAGCTCCA---AAAGAAAGTCGAAGAGGCTATCGAAG-AGGAGCTTAATA   1075

BSNT_02340___   1078 AACAGCCGTGCACGCGG---AAATTACATGCTTGACAGAGCCTTTGCCGT   1124
                     ||      |.| |||||   |||.||||||||.||||||||.||.|.|||
BL03575___pbp   1076 AA------TTC-CGCGGCTCAAACTACATGCTGGACAGAGCGTTCGTCGT   1118

BSNT_02340___   1125 AATGATGGACCCGAATAACGGCGATATTTTATCAATGGCAGGGAAAAAGA   1174
                     .||||||||||||||||||||.||.|||.|.||.|||||.||.||...||
BL03575___pbp   1119 CATGATGGACCCGAATAACGGAGACATTCTGTCCATGGCCGGAAAGCGGA   1168

BSNT_02340___   1175 TAGATTTA----AAAACCAACAAAATTGAAGATTATGCGATAGGGGCATT   1220
                     |.| |..|    ||||.||.|         ||.|||||.||.||.||.||
BL03575___pbp   1169 TCG-TCGACGGCAAAATCACC---------GACTATGCAATCGGCGCGTT   1208

BSNT_02340___   1221 TACCACCCAATATGAAATGGGATCAGCAGTAAAGGGGGCCACCGTGCTAG   1270
                     |||.|||||.||.|||||||||||.||.||.||.||.||.||||||||.|
BL03575___pbp   1209 TACAACCCAGTACGAAATGGGATCGGCGGTCAAAGGCGCGACCGTGCTTG   1258

BSNT_02340___   1271 CCGGCTATCAGGACGGAATCCCGCAT---TATAAATATTTTGTTGATACA   1317
                     ||||||||||||||||.||.||||||   .|.|..||||       ||.|
BL03575___pbp   1259 CCGGCTATCAGGACGGCATGCCGCATGGGCAGAGTTATT-------TAGA   1301

BSNT_02340___   1318 CC----TCTTTATTTAGCAGGATACGGTAACAAACCG--AAGAAA---TC   1358
                     ||    .||....||.|||||    ||.|       |  ||.|||   ||
BL03575___pbp   1302 CCAAGAGCTGAGCTTCGCAGG----GGGA-------GTTAAAAAAGGTTC   1340

BSNT_02340___   1359 CTACATGAACATGGGA---ACCATC---------AATGAATTAACCGCTC   1396
                     ||||| ||     |||   ||.|||         ||||||.|.|..||.|
BL03575___pbp   1341 CTACA-GA-----GGAAACACTATCGGTTGGGCTAATGAAGTTAGAGCGC   1384

BSNT_02340___   1397 TGCAAAAAAGTTCAAACGTATATATGTTTAATGTTGCCATGCACATTGCC   1446
                     ||.||||||||||||||||.||||||||..||||.||.|||...||.||.
BL03575___pbp   1385 TGGAAAAAAGTTCAAACGTTTATATGTTCTATGTGGCAATGAGAATGGCA   1434

BSNT_02340___   1447 GGTGTCACATACAAGCCGCATGGACCTCTTCCTGCTGACC-AGAAGGATT   1495
                     ||..|.||.||....|||.|.||.||.|||||.||..||| || ||||.|
BL03575___pbp   1435 GGAATTACGTATGTACCGAACGGCCCGCTTCCGGCGAACCTAG-AGGACT   1483

BSNT_02340___   1496 TAAACAAAATGAGAAATTACTACAGCCAATTTGGCCTGGGAGTAAAGACA   1545
                     ||||.||||||||..||||||.||..|||||||||||.||.|||||.|||
BL03575___pbp   1484 TAAAGAAAATGAGGTATTACTTCAATCAATTTGGCCTTGGGGTAAAAACA   1533

BSNT_02340___   1546 GGTATCGATCTT-CCGCAGGAATCAGCCGGAATGCAAACTACACCTGATG   1594
                     ||.||||| ||| ||||||||.||.|||||.|||||.||.|..||..|..
BL03575___pbp   1534 GGCATCGA-CTTGCCGCAGGAGTCGGCCGGGATGCAGACAAACCCAAAAA   1582

BSNT_02340___   1595 CGGTAGGGGGGTTAATTTTAGACTTG--GCCATTGGACAATACGATACAT   1642
                     ..||.|||||..|..|..|.||  ||  ||.||.||.||.|..||.||.|
BL03575___pbp   1583 TAGTCGGGGGTCTCCTCCTCGA--TGAAGCGATCGGCCAGTTTGACACGT   1630

BSNT_02340___   1643 ATACACCGCTTCAAATGGCACAGTACATCTCATCAATTGCCAATGGGGGG   1692
                     |.||.||..|.||..|.||.||.||..|.|||.|.||.|||||.||.||.
BL03575___pbp   1631 ACACGCCTTTGCAGCTCGCCCAATATGTTTCAACGATCGCCAACGGCGGA   1680

BSNT_02340___   1693 TACCGCATTCAGCCAAGAATTGTTACAAGTGTTCATGAGCC---CAGCAA   1739
                     |||.|..|.|||||.|||.|.||.|.|||..||||..||||   .|||.|
BL03575___pbp   1681 TACAGGTTGCAGCCGAGAGTCGTGAAAAGCATTCACCAGCCAGAAAGCGA   1730

BSNT_02340___   1740 AAAAGAAGGCCTTGGGAAGACCATTGAACAAAGAAAGC----CAAACATT   1785
                     ||||      ||.||...|..|||||    ||||..||    |.||..|.
BL03575___pbp   1731 AAAA------CTCGGTCCGGTCATTG----AAGAGCGCTCTGCCAATGTG   1770

BSNT_02340___   1786 CTCAACAAAATTAACAACTCAGAAAGTGACAT--TCAGCAGGTGAAGACT   1833
                     ||.||....||.|||||.||..||||.|||||  .||.|  ||.|||...
BL03575___pbp   1771 CTGAATCGTATCAACAATTCTCAAAGCGACATCGCCATC--GTCAAGCAA   1818

BSNT_02340___   1834 GGAATGAAGCTAGTTACC---------ACTTCAG-----------GGACA   1863
                     |||.|.||.|.|||.|||         |||.|||           ||   
BL03575___pbp   1819 GGATTTAAACGAGTAACCCAGACGGGAACTGCAGCCGGCGCATTCGG---   1865

BSNT_02340___   1864 GCTAAAAATACGTTTACAGAAGATGTATCAGGGAAAACGGGAACAGCGGA   1913
                             |.||.||      ||.||||||||.|||||.|||||.|||.|
BL03575___pbp   1866 --------TTCGCTT------GACGTATCAGGCAAAACCGGAACGGCGCA   1901

BSNT_02340___   1914 AACATTTTACTACGGCACGAATCGCAACTGGTGGGGGAAAAAAACATACA   1963
                     .||....|||||||||||.||.||.|||||||||||||..|..||.||||
BL03575___pbp   1902 GACGCAATACTACGGCACAAACCGAAACTGGTGGGGGACTAGGACTTACA   1951

BSNT_02340___   1964 ATCTGACTTTTGTCGGCTATTACCCATCGAAAAATCCAAAAGTGGCTTTT   2013
                     ||.|.||.||||.||||||||||||.|||.|||||||..|.||.||.||.
BL03575___pbp   1952 ATATCACCTTTGCCGGCTATTACCCGTCGGAAAATCCGCAGGTCGCCTTC   2001

BSNT_02340___   2014 AGTGTTGTTGTTCCATCAGTAAATGATGATGA------TAAGATCAATAA   2057
                     ||.|||||.||.||      .||||..||.||      .|||||.||.||
BL03575___pbp   2002 AGCGTTGTCGTCCC------GAATGTCGACGACAAAACGAAGATGAACAA   2045

BSNT_02340___   2058 AATTAT---TGCCAAAAGAGCTATCCACGCCTACGCAGAGCTCGAAAAAA   2104
                     ||..||   .|||||||..|   ||.|.|||||.|..||.||..||||||
BL03575___pbp   2046 AAACATCGCCGCCAAAATCG---TCAAAGCCTATGTCGATCTGCAAAAAA   2092

BSNT_02340___   2105 AACACAGTAAAAAATAA   2121
                     ||.||||.|||.|.||.
BL03575___pbp   2093 AATACAGCAAAGATTAG   2109


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