Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02361 and BL03587

See Amino acid alignment / Visit BSNT_02361 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_02361___ccpC.1.5803.seq
#    -bsequence dna-align/BL03587___ccpC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02361___ccpC-BL03587___ccpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02361___ccpC-BL03587___ccpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02361___ccpC
# 2: BL03587___ccpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 909
# Identity:     668/909 (73.5%)
# Similarity:   668/909 (73.5%)
# Gaps:          60/909 ( 6.6%)
# Score: 2386.5
# 
#
#=======================================

BSNT_02361___      1 ATGCAGCTTCAAGAGCTTCATATGCTCGTAGTTTTAGCTGAGGAATTAAA     50
                     ||||||||||||||||||||.|||||.||.|||.|.||.||.||||||||
BL03587___ccp      1 ATGCAGCTTCAAGAGCTTCACATGCTTGTCGTTCTGGCGGAAGAATTAAA     50

BSNT_02361___     51 TATGAGAAAGGCGGCAGAACGGCTTTTTGTATCTCAGCCGGCTTTATCTC    100
                     ||||.|.||.|||||.|||||.||.|||||.||.||||||||.|||||.|
BL03587___ccp     51 TATGCGGAAAGCGGCTGAACGTCTGTTTGTTTCCCAGCCGGCATTATCCC    100

BSNT_02361___    101 AGCGCTTACAAACCATTGAAAAGGCGTGGGGAAAAAAAATCTTTTTAAGA    150
                     ||||..|.||.|||||.||.||..|.|||||||..|||||.|||||||||
BL03587___ccp    101 AGCGGCTGCAGACCATCGAGAAATCATGGGGAACGAAAATTTTTTTAAGA    150

BSNT_02361___    151 TCTCAAAAAGGATTAACGGTAACGCCCGCCGGTGAGAAAATCATTCAGTT    200
                     ||.||||||||..|.||.||.|||.|.|||||.||.|||||.||.|||||
BL03587___ccp    151 TCGCAAAAAGGGCTGACTGTCACGTCTGCCGGAGAAAAAATTATCCAGTT    200

BSNT_02361___    201 TGCGAATGATGTGACATTAGAGCAGGAAAGAATAAGAGAAAATATTGACG    250
                     |||.||.|||||.|||||.||.|||||||.|.|.|||||.|||||.||.|
BL03587___ccp    201 TGCAAAAGATGTAACATTGGAACAGGAAAAAGTGAGAGAGAATATAGATG    250

BSNT_02361___    251 AGCTTGAAGGTGAAATTCACGGCACATTGAAGCTTGCCGTCGCCTCCATA    300
                     ||||.||.||.||.||.|||||.||..|.||..|.||.|.|||.||.||.
BL03587___ccp    251 AGCTGGAGGGCGAGATACACGGTACGCTCAAATTGGCGGCCGCTTCGATT    300

BSNT_02361___    301 ATCGGTCAGCATTGGCTCCCTAAAGTCCTGAAGACGTATGTTGAAAAGTA    350
                     |||||.|||||||||||.||.||.||.|||||.||.||.|||.||.|.||
BL03587___ccp    301 ATCGGGCAGCATTGGCTTCCGAACGTTCTGAAAACCTACGTTAAACAATA    350

BSNT_02361___    351 TCCGAATG-CAAAGATCTCGCTCATAACCGGGTGGAGCAGCGAAATGCTG    399
                     ||||||.| |||| |||||.|||.|.|||||.||||||||||||||||||
BL03587___ccp    351 TCCGAACGTCAAA-ATCTCCCTCGTCACCGGCTGGAGCAGCGAAATGCTG    399

BSNT_02361___    400 AAAAGCTTGTATGAGGATCAGGTTCATATCGGCATTATAAGAGGCAACCC    449
                     ||||||.|.||.||.||.||.||||||||.||||||||.||.||.|||||
BL03587___ccp    400 AAAAGCCTCTACGAAGACCATGTTCATATTGGCATTATCAGGGGAAACCC    449

BSNT_02361___    450 TGAGTGGAAGGGGCGCAAAG-ATTACTTAAT----GACAGATCATCTGTA    494
                     .||.||||| .|||.|.||| |.|||||.||    |||..||    ||||
BL03587___ccp    450 GGAATGGAA-AGGCCCTAAGCACTACTTGATGCGGGACGAAT----TGTA    494

BSNT_02361___    495 TTTAGTGGATACTGAAATTTCCTG---CATCGAAGATATTGCCCATACAG    541
                     ..|.||.|||||.||.||   |.|   |||.||.||.||||||.|.||.|
BL03587___ccp    495 CCTTGTCGATACAGAGAT---CCGAAACATTGAGGACATTGCCAAAACGG    541

BSNT_02361___    542 AACGGCCGTTTATCCAGTTTAAAAGTGATAGCACTTATTTTCAGGAAATT    591
                     ||||||||||.||||||||.|||||.||.|||||.||.|.||||||||||
BL03587___ccp    542 AACGGCCGTTCATCCAGTTCAAAAGCGACAGCACGTACTATCAGGAAATT    591

BSNT_02361___    592 CAGCACTGGTGGCATCAAAAATTTAAAACGTCGCCGAAACAGACGA-TAT    640
                     ||||||||||||||.|||||.||.|||||.|||||||||||.||.| |||
BL03587___ccp    592 CAGCACTGGTGGCACCAAAAGTTCAAAACATCGCCGAAACAAACCATTAT    641

BSNT_02361___    641 TGGTTGATCAGATTGAAACGTGCAAACAGATGGCGCTGCACGGAATCGGT    690
                     | ||.||.||.||||||||.||||||||||||||..|.||||||||||||
BL03587___ccp    642 T-GTCGACCAAATTGAAACATGCAAACAGATGGCTTTCCACGGAATCGGT    690

BSNT_02361___    691 TATGCCATTTTGCCGTCTGTTACCCTTCAAAATGAAG--------ATAAA    732
                     |||||.||..|.||.||.||.||.||||  |..||||        ||   
BL03587___ccp    691 TATGCGATCCTTCCATCGGTGACGCTTC--ACGGAAGCGGGAGCCAT---    735

BSNT_02361___    733 GTGAATAAAATGCCTCTTTTAGACATG--AAAGG----GCATCCGATCGG    776
                     ||..|..||||.|||.|..|.|  |||  |||||    |||    |||||
BL03587___ccp    736 GTTCACCAAATCCCTTTGCTTG--ATGCTAAAGGAAAAGCA----ATCGG    779

BSNT_02361___    777 TCGGGATACATGGTTATTAGGCTATGAGCCTGCCTTTGAACTGAAACAAG    826
                     ..|.|||||.|||.|..|.||.||||||||.||.||..|.|||||.||||
BL03587___ccp    780 CAGAGATACGTGGCTGCTCGGTTATGAGCCGGCTTTCCAGCTGAAGCAAG    829

BSNT_02361___    827 TTCAAGCTTTTGTACAAG-TGATAAAGGATATGCTGGATCA--GGAAAAT    873
                     |.||.||.||||||.||| ||..||||.||.|.|.|   ||  ||||   
BL03587___ccp    830 TACAGGCGTTTGTAGAAGTTGTGAAAGAATGTACGG---CAATGGAA---    873

BSNT_02361___    874 CCATTTTAA    882
                           |||
BL03587___ccp    874 ------TAA    876


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