Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02267 and BL03629

See Amino acid alignment / Visit BSNT_02267 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_02267___sspD.1.5803.seq
#    -bsequence dna-align/BL03629___sspD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02267___sspD-BL03629___sspD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02267___sspD-BL03629___sspD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02267___sspD
# 2: BL03629___sspD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 199
# Identity:     150/199 (75.4%)
# Similarity:   150/199 (75.4%)
# Gaps:           5/199 ( 2.5%)
# Score: 543.0
# 
#
#=======================================

BSNT_02267___      1 ATGGCGAGCAGAAATAAACTCGTTGTTCCAGGGGTGGAGCAGGCACTAGA     50
                     |||||.||.|..|||||.|||.|.|||||.||||..|||||||...||||
BL03629___ssp      1 ATGGCAAGAACGAATAAGCTCCTCGTTCCCGGGGCAGAGCAGGTTTTAGA     50

BSNT_02267___     51 CCAATTTAAACTCGAAGTGGCTCAAGAATTCGGTGTGAACCTTGGTTCTG    100
                     |||.||.|||..||||.|.||.|||||.|||||.||..|.||.||.||.|
BL03629___ssp     51 CCAGTTCAAATACGAAATCGCCCAAGAGTTCGGCGTCCAGCTCGGCTCGG    100

BSNT_02267___    101 ATACAGTCGCACGCGCTAACGGCTCTGTAGGCGGAGAAATGACAAAGCGG    150
                     |..|.|||||.|||.|.|||||.|||||||||||.|||||||||||.||.
BL03629___ssp    101 ACTCGGTCGCTCGCTCAAACGGATCTGTAGGCGGGGAAATGACAAAACGA    150

BSNT_02267___    151 CTGGTACAGCAAGCACAATCACAATTAAAT-GGCACAACT---AAATAA    195
                     ||.||||||||.||||||.|.|||||.||| ||||.|| |   ||||||
BL03629___ssp    151 CTTGTACAGCAGGCACAAGCTCAATTGAATGGGCATAA-TGACAAATAA    198


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