Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02276 and BL03631
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_02276___ykrP.1.5803.seq
# -bsequence dna-align/BL03631___ykrP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02276___ykrP-BL03631___ykrP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02276___ykrP-BL03631___ykrP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02276___ykrP
# 2: BL03631___ykrP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1103
# Identity: 718/1103 (65.1%)
# Similarity: 718/1103 (65.1%)
# Gaps: 157/1103 (14.2%)
# Score: 2143.5
#
#
#=======================================
BSNT_02276___ 1 ATGAGTAAATCGCGGGACAGTTATTTCGATAACGCAAAATTTTTATTGAT 50
|||...||.||.||.|||||.||||||||.|||||||||||..|||||||
BL03631___ykr 1 ATGGCGAATTCACGCGACAGCTATTTCGACAACGCAAAATTCCTATTGAT 50
BSNT_02276___ 51 ATTCCTTGTTGTATTCGGTCATATCCTTCGTTCCTTTATTAATGATAATC 100
.||.||.||.||.|||||.|||||..|..|.||||.||||.||||.||
BL03631___ykr 51 TTTTCTCGTCGTCTTCGGACATATAATCAGGTCCTATATTCATGACAA-- 98
BSNT_02276___ 101 ATTTTATGCTCTACCTC-----TACAAGTTCATTTACACATTCCATATGC 145
|.||||.||.|.|| ||.||.||.||||||||.||.|||||||
BL03631___ykr 99 ---TGATGCACTGCTTCATATTTATAAATTTATTTACACGTTTCATATGC 145
BSNT_02276___ 146 CTGCATTTATTCTTGTATCCGGTTATTTCGCGAAAGGCTTTAAACGGGCG 195
||||.||||||||..||||.||.|||||.||.|||||.||.||.|||.|.
BL03631___ykr 146 CTGCTTTTATTCTCATATCAGGCTATTTTGCAAAAGGGTTCAATCGGCCC 195
BSNT_02276___ 196 GGATATGTAAAAAAGCTGGC--GGTCAAGCTGATTATTCCGTATTTGATT 243
||||||||.|||||..|.|| || ||||||||..||||.|||||||||
BL03631___ykr 196 GGATATGTCAAAAAAATCGCCTGG--AAGCTGATCGTTCCCTATTTGATT 243
BSNT_02276___ 244 TTCCA---AATCATTTATTCCGTCTTTTATTACATTATGCAAGATGAAAG 290
||||| |||| |||.|..|.|||||||.|.||||..|.|||.||||
BL03631___ykr 244 TTCCAGGGAATC---TATACGCTGTTTTATTCCTTTATCGATGATCAAAG 290
BSNT_02276___ 291 CAT------GGCAAATGTGAACCCGATTGATCCGCAATGGTCGTTATGGT 334
|.| .|||||| |||.||||.||||||||||||.|.||||
BL03631___ykr 291 CTTAACTGCCGCAAAT------CCGTTTGAACCGCAATGGTCGCTTTGGT 334
BSNT_02276___ 335 TTCTTG-TAAGCTTATTCTTTTGGAACCTGCTCCTATATCCTTTTTCAAA 383
|| ||| |.|||||.||.||||||||.||.||..|.|.|||.||..||||
BL03631___ykr 335 TT-TTGCTGAGCTTGTTTTTTTGGAATCTCCTGTTGTTTCCGTTCACAAA 383
BSNT_02276___ 384 AGTTTC----AAAGCAGTGGGCGCTGTTTGTC---AGC--TGCGGAATCG 424
|.|..| ||| ||||| |||||.| ||| |||| ||.|
BL03631___ykr 384 ACTGCCGGCGAAA----TGGGC---GTTTGCCGCAAGCTTTGCG--ATTG 424
BSNT_02276___ 425 CCGTGCTGATCGGTTATCTGGACTTTGTCAGCAGCACGCTGAGCTTGTCA 474
||||.||..||||.|||.|.|||.|..||||||.||||||.|||.||||.
BL03631___ykr 425 CCGTTCTTGTCGGGTATATCGACATGATCAGCAACACGCTCAGCCTGTCC 474
BSNT_02276___ 475 CGGACATTCGTATTCTTACCGATGTTCCTTGTC-GGTTTTTATTTAAATA 523
||.||.||.||.|||||.|||.|.|| .|||.| ||.|.||||||..|.|
BL03631___ykr 475 CGCACGTTTGTTTTCTTTCCGGTCTT-TTTGGCGGGCTATTATTTGCAAA 523
BSNT_02276___ 524 AACATCATTTTGATTTATTGA---GATCGAAACGCGGCAAACAAATTGC- 569
||.|.||||||.|..|..||| |.|.|||| ||.||.||| ||
BL03631___ykr 524 AAGACCATTTTAAAATGCTGAAAGGCTGGAAA---GGAAAGCAA---GCG 567
BSNT_02276___ 570 GCTCGGAGTGCTTGCC------GCAGTA---TTCGTCATCTGC--TGGGG 608
||| ||.||| ||||.| |||||..|||.| |...|
BL03631___ykr 568 GCT-------CTAGCCGTTTTAGCAGCAACGTTCGTTTTCTACTTTTTTG 610
BSNT_02276___ 609 CATCGATTTTGACTATTCTTTTCTGTTTGGTTCAAAACCGTATTCTTCAT 658
|| ||.||.||.||.||.|..|||||.|||||.||.||.|||||...||
BL03631___ykr 611 CA--GACTTCGATTACTCCTGGCTGTTCGGTTCCAAGCCTTATTCGGAAT 658
BSNT_02276___ 659 TTGGAGACGTTACCCTGG----TAAGCGGACTATCCCGAATCGGCTGGTA 704
|.||.||.|| |.|| .||||||..|| ||.|||.|||
BL03631___ykr 659 TCGGCGATGT----CGGGATAAAAAGCGGGTTA-----AACCGGGTGG-- 697
BSNT_02276___ 705 TG-TACTCG------CCTTTGGGGCAACCTTCAGC-TTTTTAGCGCTTGT 746
.| |.|||| |.||||...|||||||| || ||..|.|||||.||
BL03631___ykr 698 CGCTTCTCGTTATAACATTTGCCTCAACCTTC-GCGTTCATGGCGCTGGT 746
BSNT_02276___ 747 TCCGCAAAAACGGTATTTCTTTACCAAATGGGGAACCCGGACATTTTACG 796
.||..|||..|||||||||||||||...||||||||.||.|||||.||.|
BL03631___ykr 747 GCCTGAAAGGCGGTATTTCTTTACCCTCTGGGGAACGCGCACATTCTATG 796
BSNT_02276___ 797 TGTATCTGCTTCACGGGTTTATTATTAAGACATTACGACAGGTCGGGC-T 845
|.||.|||||.|||||.|||||.||.|||.|.||..|| |.|.||||| .
BL03631___ykr 797 TCTACCTGCTGCACGGCTTTATCATCAAGTCGTTCAGA-AAGACGGGCGC 845
BSNT_02276___ 846 TGAGGATTGGCTTACTGACTATCAAAG-CT-----TAGTGATCCTCTTGC 889
.||.||.||||||.|.||.|||||.|| || ||.||.||.|| ||
BL03631___ykr 846 GGAAGAATGGCTTGCCGATTATCAGAGTCTGACGCTATTGTTCATC--GC 893
BSNT_02276___ 890 --------TTTTAACAGCAGCCCTGACATCAGTCCTCTCCAGCAACTTTG 931
||||||| |.||.| |.|.||.|||...||||
BL03631___ykr 894 CACGGCAATTTTAAC-----------CTTCTG-CTTATCAAGCGGATTTG 931
BSNT_02276___ 932 TTAAGACAGTCGCTCAGCCCTTCATTGAGCTGAGGATGACCAGCTTA--- 978
|.||.||.|||||.|||||.|||||.||..|.|..|||||.|..|||
BL03631___ykr 932 TGAAAACGGTCGCCCAGCCGTTCATCGAATTAAAAATGACGAATTTAATA 981
BSNT_02276___ 979 ------TTGCAATTTGTCAGAG-GAACGGGCA-AAAATGCTTATTTAAAA 1020
|||.|| |.|| .||||| | |.||..|||||||||||
BL03631___ykr 982 AGGCTGTTGAAA------AAAGACAACGG--ATATAACCCTTATTTAAAA 1023
BSNT_02276___ 1021 TAG 1023
||.
BL03631___ykr 1024 TAA 1026
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