Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02291 and BL03636

See Amino acid alignment / Visit BSNT_02291 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02291___ykvA.1.5803.seq
#    -bsequence dna-align/BL03636___ykvA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02291___ykvA-BL03636___ykvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02291___ykvA-BL03636___ykvA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02291___ykvA
# 2: BL03636___ykvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 385
# Identity:     198/385 (51.4%)
# Similarity:   198/385 (51.4%)
# Gaps:         119/385 (30.9%)
# Score: 439.0
# 
#
#=======================================

BSNT_02291___      1 ---------ATGAAGAAAAAGAAAGCAAT---AATGCTCGGAGCGGCAGG     38
                              ||||.||||   |||.||.|   ||.||||.|         
BL03636___ykv      1 ATGCGCCAAATGATGAAA---AAACCAGTTTCAAAGCTCCG---------     38

BSNT_02291___     39 CGGAAAAGCGATTTT------AAAGAGGAAAAACCGAAAAAAATGTATTC     82
                          ||.||..|||      |||||.|.|               |||||
BL03636___ykv     39 -----AACCGTCTTTGCCGTGAAAGAAGCA---------------TATTC     68

BSNT_02291___     83 AGCACATCACTATTTTTTTTCAG---ATGCTTCGCGATTGGCGAAATGGC    129
                     || .|.|| .||||.||||||||   ||  ||.|.|..|||.||||.||.
BL03636___ykv     69 AG-GCCTC-TTATTGTTTTTCAGGGCAT--TTAGAGCCTGGAGAAAGGGA    114

BSNT_02291___    130 GACTATCC-----TCGGTCACAGGTTAAAACACTTTTGCTGTTAACTGCC    174
                     |||||.||     ||     |.|...||||||.||||||||      |||
BL03636___ykv    115 GACTACCCCTTATTC-----CCGAAAAAAACAATTTTGCTG------GCC    153

BSNT_02291___    175 ------GCAATTCTGTATAT--CGTCATGCCGCTCGATATCATTCCAGAC    216
                           |||.||.|.|||.|  .||||  |||.|||||.|.||.||.||.
BL03636___ykv    154 GCGCTGGCATTTATCTATGTGCTGTCA--CCGATCGATTTGATCCCCGAT    201

BSNT_02291___    217 GTAATCCTCG-----GTCTTGGGTTCATTGACGATGCAGCTGTTTTAGGT    261
                     |   |.||||     |||  ||.|...||||.|||||.|||||..|.|.|
BL03636___ykv    202 G---TTCTCGCAGGCGTC--GGCTGGCTTGATGATGCGGCTGTGCTCGCT    246

BSNT_02291___    262 TTGATTTGGACACTGATTAAAAAAGAACTGTCAC-AGTATGAAA------    304
                     ||..|.|..|..|..||.|..|||||.||| .|| .||.|||||      
BL03636___ykv    247 TTTCTCTTCAGGCAAATCACCAAAGAGCTG-GACGGGTTTGAAACACATC    295

BSNT_02291___    305 ----AGTG-GCGT---TTGCAAT--AA--------    321
                         ||.| |.||   ||.||||  ||        
BL03636___ykv    296 TAACAGGGAGAGTAAATTACAATGGAAAACAATAA    330


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