Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02299 and BL03639

See Amino acid alignment / Visit BSNT_02299 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02299___motA.1.5803.seq
#    -bsequence dna-align/BL03639___motA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02299___motA-BL03639___motA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02299___motA-BL03639___motA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02299___motA
# 2: BL03639___motA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 842
# Identity:     586/842 (69.6%)
# Similarity:   586/842 (69.6%)
# Gaps:          70/842 ( 8.3%)
# Score: 1970.0
# 
#
#=======================================

BSNT_02299___      1 ATGGATAAAACTTCGTTAATCGGTATTATTCTT-GCTTTTGTGGCATTGA     49
                     |||||.|||||.||||||||.||.||.| |||| |||.|..|.|.|.|..
BL03639___mot      1 ATGGACAAAACATCGTTAATTGGAATCA-TCTTAGCTATCATCGGAGTAG     49

BSNT_02299___     50 GCGTCGGGATGGTTCTGAAAGGCGTCAG--TTTCAGCGCCCTTGCAAACC     97
                     |.|||||.|||||..|||||||.|||||  .|||  ||..||.|..||.|
BL03639___mot     50 GTGTCGGCATGGTCATGAAAGGTGTCAGCCCTTC--CGTTCTCGTCAATC     97

BSNT_02299___     98 CCGCTGCCAT-TTTAATTATTATCGCCGGGACAATCTCAGCAGTCGTTAT    146
                     |||| |.||| ..|.||.||..|.|.||||||||||.|||||||.||.||
BL03639___mot     98 CCGC-GGCATGGCTGATCATCCTTGTCGGGACAATCGCAGCAGTTGTGAT    146

BSNT_02299___    147 TGCGTTCCCAA----CAAAAGAAATTAAAAAAGTGCCTGCGCTGTTTCGA    192
                     .||.||.||||    |    ||..|.|||||.||.||....||.||..|.
BL03639___mot    147 CGCTTTTCCAATCCGC----GAGCTCAAAAAGGTTCCCAAACTCTTCGGC    192

BSNT_02299___    193 GTGTTATTTAAGGAAAATAAACAGCTCACAATAGAGGAACTCATTCCTAT    242
                     .|.||.||.||.||.||.||...|.||..|||..|.|||||.||.||.||
BL03639___mot    193 ATCTTGTTCAAAGAGAAGAAGATGATCGAAATCAACGAACTGATCCCGAT    242

BSNT_02299___    243 GTTCTCTGAATGGGCTCAGCTTGCACGCCGCGAAGGTCTGCTTGCTTTAG    292
                     |||.||.||.|||||.||..|.|||.|.||||||||.||.||.|||||.|
BL03639___mot    243 GTTTTCCGAGTGGGCGCAAATCGCAAGACGCGAAGGACTTCTCGCTTTGG    292

BSNT_02299___    293 AAGCAAGCA-TTGAGGATG---TAGATGATGCTTTCTTGAAAAACGGGCT    338
                     ||||||  | ||||  |||   |.|||||||..||.|||||||||||..|
BL03639___mot    293 AAGCAA--ATTTGA--ATGAGATCGATGATGAATTTTTGAAAAACGGCAT    338

BSNT_02299___    339 CAGCATGGCTGTTGACGGGCAAAGCGCGGAATTTATCAGAGATATTATGA    388
                     .||||||||.||||||||.|||||.||.||.||||||||.||..||.|.|
BL03639___mot    339 GAGCATGGCGGTTGACGGTCAAAGTGCCGATTTTATCAGGGACGTTTTAA    388

BSNT_02299___    389 CAGAGGAAGTCGAAGCAATGGAGGACAGGCACCAAGCCGGAGCCGCTATT    438
                     |.||.|||||.|||||||||||.||.|||||.||||.||||||.|.||||
BL03639___mot    389 CTGAAGAAGTTGAAGCAATGGAAGAAAGGCATCAAGTCGGAGCGGGTATT    438

BSNT_02299___    439 TTTACACAAGCGGGAACGTACGCCCCGACACTTGGAGTACTCGGTGCTGT    488
                     |||||.||.||.||.||.||.||.||||||||.||.||..|.||.|||||
BL03639___mot    439 TTTACCCAGGCAGGCACATATGCGCCGACACTCGGCGTTTTGGGCGCTGT    488

BSNT_02299___    489 AATCGGGCTGATTGCCGCTCTCTCTCATATGGATAACACAGATGAGCTTG    538
                     ..||||.|||||.|||||.||..|..|||||....|||||||.|.|||||
BL03639___mot    489 TGTCGGACTGATCGCCGCACTTGCGGATATGAGCGACACAGAAGCGCTTG    538

BSNT_02299___    539 GACACGCCATCAGTGCCGCCTTTGTTGCCACACTTCTCGGTATCTTTACA    588
                     ||||.||.|||||.|||||||||||.|||||.||||||||.|||||.||.
BL03639___mot    539 GACATGCGATCAGCGCCGCCTTTGTCGCCACCCTTCTCGGGATCTTCACC    588

BSNT_02299___    589 GGGTATGTGTTATGGCATCCTTTCGCAAATAAATTAAAACGAAAATCAAA    638
                     ||.|||||..|||||||||||||.||.|||||||||||.||.|||||.||
BL03639___mot    589 GGATATGTACTATGGCATCCTTTTGCCAATAAATTAAAGCGGAAATCCAA    638

BSNT_02299___    639 ACAAGAAGTAAAACTGCGTGAGGTCATGATTGAAGGTGTTTTATCCGTT-    687
                     |||.|||||.|||.|.||.||.||.|||||||||||     .||||.|| 
BL03639___mot    639 ACAGGAAGTCAAAGTCCGCGAAGTTATGATTGAAGG-----CATCCTTTC    683

BSNT_02299___    688 ----TTAGAAGGACAAGCACCGAAAGTCATCGAACAAAAGCTTTTAATGT    733
                         ||.|||||.||.||.||.||||||||.||||||||||||||.||||
BL03639___mot    684 GATCTTGGAAGGCCAGGCTCCAAAAGTCATTGAACAAAAGCTTTTGATGT    733

BSNT_02299___    734 ATCTTCCTGCGAAG-GACCGCTTGAAATTTG------CAGA-----ACAA    771
                     |..||.|| |.||| ||.||||..|...|.|      ||||     ||||
BL03639___mot    734 ACGTTTCT-CCAAGCGAACGCTCCAGCATCGTCATCCCAGATGGAGACAA    782

BSNT_02299___    772 ---GGAGAGGCGCAAAATGGCGAGAAAAAAGAAGAAGCATGA    810
                        |||.||..||  ||||||.||                  
BL03639___mot    783 AGGGGACAGCAGC--AATGGCTAG------------------    804


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