Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02334 and BL03645
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02334.1.5803.seq
# -bsequence dna-align/BL03645___ykwB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02334-BL03645___ykwB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02334-BL03645___ykwB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02334
# 2: BL03645___ykwB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 760
# Identity: 455/760 (59.9%)
# Similarity: 455/760 (59.9%)
# Gaps: 149/760 (19.6%)
# Score: 1244.0
#
#
#=======================================
BSNT_02334 1 AT----GATCATACTA-AAACAAATGTATGTGCATGACGGCAGAAAATTT 45
| ||| ||| |||||..|.||.||..||.||||| |.||
BL03645___ykw 1 -TTGGCGAT----CTATAAACAGTTTTACGTCGATAACGGC-----ACTT 40
BSNT_02334 46 --------GAGGCTCTGACCATCAGAAACTACACTGAGACTGACAT---C 84
.||| ||..||||.|.||.||||...|.|..||.|| |
BL03645___ykw 41 CTTATCAGCAGG---TGGACATCCGCAATTACAGCAAAAAAGATATTCCC 87
BSNT_02334 85 GAGAGGCTGATTTCTCTTCAAGAAGAATGTTTCCCTCCTCCGTTTCCCCA 134
| |..|||||.||||.|||..||||||.||.||.|||||||||||
BL03645___ykw 88 G---GTTTGATTGCTCTCCAAAGAGAATGCTTTCCGCCTCCGTTTCC--- 131
BSNT_02334 135 GGAA----TTGCTGTGGTCAGAGGACCAGCT---TGTCAGCCATATCAAA 177
|||| || ||||||...||.||.||||| | || ||||||..||
BL03645___ykw 132 GGAAGACCTT-CTGTGGAATGAAGAGCAGCTCCAT-TC--CCATATTGAA 177
BSNT_02334 178 ACCTTTCCGGAAG--GCGCTTTATGCGCGC----TCATCAATGGCAGAAT 221
...|||||.||.| ||||||| |||| || |.|.|||.|.||
BL03645___ykw 178 CGATTTCCCGATGGAGCGCTTT----GCGCAGTTTC--CGAAGGCCGCAT 221
BSNT_02334 222 TATCGGTTCCATGACTGCTCTTATTGTACAATTTGAGCCTGAATC-TCCT 270
.||||||||.|||||.||.||.||.|...|.|||||.|| |.||| |||.
BL03645___ykw 222 CATCGGTTCGATGACAGCGCTCATGGCTGATTTTGATCC-GCATCATCCG 270
BSNT_02334 271 GATCATACTTGGGCACAAGCAACAGACAACGG----ATCG------ATTA 310
.|.||.|..||||...|||..||.|||||||| |||| ||.|
BL03645___ykw 271 CACCACAGCTGGGATGAAGTGACGGACAACGGGTATATCGGCACACATCA 320
BSNT_02334 311 AAAATCATGAACCTC-ATGGAAA-TACTTTATATGTAGTGGATATTTCTG 358
||| | ||||||| |.|.|| |||||.||.||||||||.|
BL03645___ykw 321 AAA-----------CGATGGAAACTCCCTT-TATGTCGTCGATATTTCCG 358
BSNT_02334 359 TTTCTCCTCATTATCGAAAGCTTGGAATCGGAAAATGGCTGATG-AATAC 407
|.||.||..|.||||||||.||.||.|||||||...|||||||| ||| |
BL03645___ykw 359 TGTCCCCCGACTATCGAAAACTCGGCATCGGAATGCGGCTGATGCAAT-C 407
BSNT_02334 408 GATGTATGAGCTGACTGTTGATAAGAGACTGGAGCGCCTTCTCGGCGGCG 457
.||||||||.|||||.||...|||..|.||..||||.||..|.|||||||
BL03645___ykw 408 CATGTATGAACTGACGGTCTTTAAAGGGCTCAAGCGTCTCATTGGCGGCG 457
BSNT_02334 458 GCCGCATTCCTTTATATCATAAATACGCACACGAGATCAGCG-CTGTTCA 506
|.||.|||||....|||||.||.|..||..|.||.||.| || |.|..||
BL03645___ykw 458 GACGGATTCCCCATTATCACAAGTCGGCTGAAGAAATGA-CGCCCGAACA 506
BSNT_02334 507 GTACGTTGAAGATGTGATGGAAGGCAGGAAAA--ACGACCCTGTACTGTC 554
|||.|||.|||.|||..||||.|| |||||| .|||.||.||.||.||
BL03645___ykw 507 GTATGTTCAAGCTGTATTGGACGG--GGAAAAGCGCGATCCAGTGCTCTC 554
BSNT_02334 555 CTTTCTCCTCCGTTGCGGGCGTTCACCTATTCGTGTAGTAAGCAAT---- 600
.||.||.||.|.||||||.||.||.||..||.|||| .||
BL03645___ykw 555 GTTCCTGCTTCATTGCGGACGCTCTCCAGTTTGTGT-------GATTCCC 597
BSNT_02334 601 ---TATGTAGAGGATAAAGAATC-ATTGAATTACGGCGTTTTGATGGAAT 646
||..|.||.|||.|.||||| .||| ||||.|..||.||.|||||.|
BL03645___ykw 598 GGCTACATTGAAGATGAGGAATCGCTTG-ATTATGCGGTGTTAATGGAGT 646
BSNT_02334 647 GGAAAAATCCTTTTT----ATAAAAAGAGAGCTGTTGATCACAACAGCCC 692
||||||||||||||| ||||
BL03645___ykw 647 GGAAAAATCCTTTTTTAACATAA--------------------------- 669
BSNT_02334 693 GTTTAAGTGA 702
BL03645___ykw 669 ---------- 669
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