Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02352 and BL03652
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02352___ykuD.1.5803.seq
# -bsequence dna-align/BL03652___ykuD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02352___ykuD-BL03652___ykuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02352___ykuD-BL03652___ykuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: BL03652___ykuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 536
# Identity: 356/536 (66.4%)
# Similarity: 356/536 (66.4%)
# Gaps: 70/536 (13.1%)
# Score: 1129.5
#
#
#=======================================
BSNT_02352___ 1 ATGAGGAAACTGCTTACGTACCAGGTGAAGCAAGGTGATACAC-TGAACA 49
.||||.|.||||||.||.||.|..||.||.||.| |||| |
BL03652___yku 1 ---------TTGCTGATGTACCAAGTCAAACCCGGAGAAACCCTTGAA-A 40
BSNT_02352___ 50 GCATCGCGGCTGATTTCAGAATCAGCACGGC-TGCATTACTCCAGGCTAA 98
|||||||.||.|||||||||| |..|.|||| .||.||.||.|||||.||
BL03652___yku 41 GCATCGCCGCCGATTTCAGAA-CGACCCGGCAGGCGTTGCTGCAGGCGAA 89
BSNT_02352___ 99 TCC-GTC----ACTGCAGGCAGGGCTCACCGCAGGACAGTCCATAGTCAT 143
||| |.| ||.||.|.||.| |..||||.||.|||||.||..||||
BL03652___yku 90 TCCTGGCTTAAACGGCGGCCAAG--TGTCCGCGGGCCAGTCGATTATCAT 137
BSNT_02352___ 144 CCCCGG-------ACTGCCGGACCCTTATACAATTCCGTATCATATCGCA 186
.||||| |.| |||||| ||||||||.||.|..||.||.
BL03652___yku 138 TCCCGGCATCAGAAAT-CCGGAC------ACAATTCCATACCGGATTGCC 180
BSNT_02352___ 187 G----TCTCAATCGGAGCGAAGACCCTTACGC------TGTTCCTAAATA 226
| |||||| || ||||| |||| ||| ||.
BL03652___yku 181 GTGTCTCTCAA-CG----GAAGA-----ACGCTCAGATTGT------ATG 214
BSNT_02352___ 227 ATCGGG------TAATGAAAACCTATCCCATCGCCGTTGGTAAAATACTA 270
|.||.| |..|.|||||.|||||.||.|||||.||.|||||.||.
BL03652___yku 215 AGCGAGACAGACTTGTAAAAACATATCCGATTGCCGTCGGAAAAATCCTC 264
BSNT_02352___ 271 ACGCAAACGCCTACTGGCGAGTTTTACATTATTAACCGCCAGCGCAATCC 320
||.||.|||||.|..|||||.|||..|||..|.|||||.||||..|||||
BL03652___yku 265 ACACAGACGCCGAGAGGCGAATTTGTCATCGTCAACCGGCAGCCAAATCC 314
BSNT_02352___ 321 CGGCGGCCCATTTGGCGCTTATTGGCTGAGCCTTTCAAAGCAGCACTACG 370
.||||||||.||.|||||.||.|||||||||||.|||||.||||||||||
BL03652___yku 315 GGGCGGCCCGTTCGGCGCCTACTGGCTGAGCCTGTCAAAACAGCACTACG 364
BSNT_02352___ 371 GAATACATGGGACGAATAATCCCGCTTCGATTGGTAAGGCTGTTTCTAAA 420
|.||.|||||.||||||||.||..|.||.|||||.||.||||||||.|..
BL03652___yku 365 GCATCCATGGAACGAATAACCCTTCGTCAATTGGCAAAGCTGTTTCAAGG 414
BSNT_02352___ 421 GGCTGCATTCGCATGCATAACAAAGACGTGATCGAACTTGCTTCAATTGT 470
||.||.||.||||||||.||....||.||..|.|||||||||||.||.||
BL03652___yku 415 GGATGTATCCGCATGCACAATCGGGATGTTCTGGAACTTGCTTCTATCGT 464
BSNT_02352___ 471 GCCAAACGGAACAAGAGTCACGATTA-ACCGGTAA- 504
.||.||||||||..||||..|.|||| ||| |.|
BL03652___yku 465 ACCCAACGGAACCCGAGTGTCCATTACACC--TTAG 498
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