Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02353 and BL03653

See Amino acid alignment / Visit BSNT_02353 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02353___ykuE.1.5803.seq
#    -bsequence dna-align/BL03653___ykuE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02353___ykuE-BL03653___ykuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02353___ykuE-BL03653___ykuE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02353___ykuE
# 2: BL03653___ykuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 928
# Identity:     594/928 (64.0%)
# Similarity:   594/928 (64.0%)
# Gaps:         137/928 (14.8%)
# Score: 1828.5
# 
#
#=======================================

BSNT_02353___      1 ATGAAAAAGATGTCCAGAAGACAATTTCTAAAAGGAATGTTCGGCGCTCT     50
                     ||||||||...||||||||||||||||.|||||||..|.||.|||   ||
BL03653___yku      1 ATGAAAAATCCGTCCAGAAGACAATTTTTAAAAGGCTTCTTAGGC---CT     47

BSNT_02353___     51 TGCTGC--CGGGGCT-TTAACGGCCGGCGGGGGATATGGCTATGCCAGGT     97
                     |||.||  |.||||| ||.||.||.|.|||.||.|..||||||||..|.|
BL03653___yku     48 TGCCGCAGCAGGGCTCTTTACCGCTGCCGGCGGCTTGGGCTATGCGCGCT     97

BSNT_02353___     98 ATCTCGAGCCGCATATGATCGAGACAACCGAACACACAATAAAAAGCTCT    147
                     |||||||.|||||.|||.|.||        ||||.||..||       .|
BL03653___yku     98 ATCTCGAACCGCACATGCTTGA--------AACAAACTTTA-------TT    132

BSNT_02353___    148 CTCATCCCGCA-CGG---ATT--TGACGGTTTTAA---------AATCGT    182
                     |.|||.|.||| |||   |||  |.|.||.|||.|         .|||||
BL03653___yku    133 CCCATTCGGCATCGGCTCATTCCTAAAGGGTTTGATCAGTTTCGGATCGT    182

BSNT_02353___    183 GCAGTTCAGCGATGCACACTTGAGTGATTACTTTACTCTCGAAGA---TT    229
                     .||||||||||||.|.|||||.||.||.||||||||....||.||   ||
BL03653___yku    183 TCAGTTCAGCGATACCCACTTAAGCGAATACTTTACAGCAGACGAGCTTT    232

BSNT_02353___    230 TAAAAACTGTCATTCTTACAATTAA-TGAA-----TCTAAACCTGATCTC    273
                     .|||...|||||..|        || ||||     ||| ..||.|||||.
BL03653___yku    233 CAAATGTTGTCAGCC--------AAGTGAACGCCCTCT-CCCCGGATCTT    273

BSNT_02353___    274 ATTGTTTTTACAGGTGATATTATCGATAATCCTGATACG-TACCAGCACC    322
                     ||.||.||.|..||.|||.|.||.|||||.||..|| || ||||.|.|.|
BL03653___yku    274 ATCGTATTCAGCGGGGATTTAATAGATAAACCGCAT-CGCTACCGGGAAC    322

BSNT_02353___    323 ACCAG---GCAGTCATTCCATTATTGAGAAAGCTTAATGCTCCCTTCGGC    369
                     ||.||   ||.||.|...|.|||   |.|||||||...||.||||..||.
BL03653___yku    323 ACGAGCGTGCTGTAAGCGCCTTA---AAAAAGCTTTCAGCCCCCTATGGA    369

BSNT_02353___    370 AAGCTTTGTATTTACGGCAATCATGATCACGGAGGCTATGGAACTGCCGT    419
                     ||||||..|||.|.|||.||.|||||||||||||||||||||        
BL03653___yku    370 AAGCTTGCTATATTCGGGAACCATGATCACGGAGGCTATGGA--------    411

BSNT_02353___    420 TTACAAAAGCCTGATGA--------------CGGCCGGAGGTTTCACGGT    455
                       |||||||.|| ||.|              |||||   |||||...|||
BL03653___yku    412 --ACAAAAGTCT-ATCAGACGCTCATGGCATCGGCC---GGTTTTCGGGT    455

BSNT_02353___    456 ATATCGCAATGGCTATCAAAC-----------------ATTG-TCACTCG    487
                                |||...||||                 |||| |      
BL03653___yku    456 -----------GCTGCGAAACGATTTGCTGAAGCTTGAATTGAT------    488

BSNT_02353___    488 CAGATGGCAGCAAAATCGAGATTGCTTCGCTTGATGACTTAATGCTGGGA    537
                      |||.||.|||..|||.|||||.|||||.||.|||||.||.|||||.||.
BL03653___yku    489 -AGACGGAAGCGTAATTGAGATCGCTTCACTCGATGATTTGATGCTCGGC    537

BSNT_02353___    538 AACCCAGATTATGAAGGCACCCTTTCAAGGCTGAGCGACAGACTTTTTTC    587
                     |..||.||.||.|||||||.|||.||||.|||||||.|.|.|...|||||
BL03653___yku    538 AGACCTGACTACGAAGGCATCCTGTCAAAGCTGAGCAAAAAAGCCTTTTC    587

BSNT_02353___    588 CATTCTTCTCGTCCATGAACCTGATGCGGCCTTGAAAACAACAGAT---T    634
                     .|||.|.|||||||||||.||||||||.||.||   |||..||.||   |
BL03653___yku    588 GATTTTGCTCGTCCATGAGCCTGATGCCGCTTT---AACGGCAAATCAAT    634

BSNT_02353___    635 ATCCCGTGAACCTTCAGCTTTCCGGCCATACACACGGCGGCCAGATTCAG    684
                     |.|||||.||.||.||..|.|||||.||.||.||||||||.||.||||||
BL03653___yku    635 ACCCCGTCAATCTGCAAATATCCGGACACACCCACGGCGGACAAATTCAG    684

BSNT_02353___    685 CTGCCTTTTTACGGACCGATTATTACGCCTCCATATGGAAAAGTCTACAC    734
                     .|.||..|.|.|||.||..|.|||||||||||.||.|||.||.|.||.||
BL03653___yku    685 ATTCCCGTATTCGGTCCTTTGATTACGCCTCCGTACGGAGAAATTTATAC    734

BSNT_02353___    735 AGAGGGAATGTATCAAACGGGCAGCACTCATATTTACGTAAACCGAGGCC    784
                     .||.|||||||||.||||.|.|.|.|...|.||.||.||.||.|||||..
BL03653___yku    735 GGAAGGAATGTATGAAACAGCCGGAATGAAAATCTATGTCAATCGAGGAA    784

BSNT_02353___    785 TCGGGATGACCAGGCTGCCTTTGCGGTTTCTGGCCAAGCCTGAAATCACT    834
                     ||||.|.||||||||||||..|.||.||||||.|.||||||||||||||.
BL03653___yku    785 TCGGCACGACCAGGCTGCCGCTCCGCTTTCTGTCAAAGCCTGAAATCACC    834

BSNT_02353___    835 GTCTT-CACCTTAAAAAGCACAAATTAA    861
                     ||.|| ||.|||.||    .|.|.||||
BL03653___yku    835 GTGTTCCAGCTTGAA----TCCATTTAA    858


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