Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02754 and BL03663
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:31
# Commandline: needle
# -asequence dna-align/BSNT_02754___mutS.1.5803.seq
# -bsequence dna-align/BL03663___mutS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02754___mutS-BL03663___mutS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02754___mutS-BL03663___mutS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02754___mutS
# 2: BL03663___mutS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2689
# Identity: 1975/2689 (73.4%)
# Similarity: 1975/2689 (73.4%)
# Gaps: 191/2689 ( 7.1%)
# Score: 7165.0
#
#
#=======================================
BSNT_02754___ 1 ATGGCCGGTTATACGCCTATGATACAGCAATATTTAAAAATAAAGGCAGA 50
|||||.||.||.||||||||||||||||||||||||||.||.||||||||
BL03663___mut 1 ATGGCAGGCTACACGCCTATGATACAGCAATATTTAAAGATTAAGGCAGA 50
BSNT_02754___ 51 GCACCAGGATGCCTTTTTATTTTTTCGCCTGGGTGATTTTTACGAAATGT 100
|.|.|||||||||||||||||||||||.||.||.||.|||||.||.||||
BL03663___mut 51 GTATCAGGATGCCTTTTTATTTTTTCGTCTTGGCGACTTTTATGAGATGT 100
BSNT_02754___ 101 TTTTTGAGGACGCCAAAAAAGCGTCACAAGAGCTGGAAATTACGTTAACG 150
|||||||.||.||.|||||.|||||.||.|||||.|||||.|||.|.|||
BL03663___mut 101 TTTTTGAAGATGCAAAAAAGGCGTCTCAGGAGCTCGAAATCACGCTGACG 150
BSNT_02754___ 151 AGCAGAGATGGCGG-TGCGGCTGAAAAAATACCGATGTGCGGTGTGCCGT 199
|||||.||.||.|| |...|| ||||.|||.|||||||||||.||.||.|
BL03663___mut 151 AGCAGGGACGGAGGATCAAGC-GAAAGAATTCCGATGTGCGGGGTTCCTT 199
BSNT_02754___ 200 ATCATT-CTGCTTCCGCGTATATCGAACAGCTTATTAAAAAAGGATACAA 248
|||||| |||| ||..||||||||||||||||.|||||||||||.||.||
BL03663___mut 200 ATCATTCCTGC-TCTTCGTATATCGAACAGCTCATTAAAAAAGGCTATAA 248
BSNT_02754___ 249 AGTGGCGATCTGTGAACAGACGGAAGATCCGAAAGCCGCAAAGGGCGTTG 298
|||.|||||||||||||||..|||.||.||.|||.|.||.||.||.||.|
BL03663___mut 249 AGTCGCGATCTGTGAACAGGTGGAGGACCCTAAATCGGCCAAAGGAGTCG 298
BSNT_02754___ 299 TGAAAAGAGAAGTGGTTCAGCTGATTACGCCCGGAACTGTAATGGACGGC 348
|.|||||.|||||.||.||||||||.||.|||||.||.||.|||||||||
BL03663___mut 299 TCAAAAGGGAAGTCGTGCAGCTGATCACACCCGGCACCGTGATGGACGGC 348
BSNT_02754___ 349 AAAGGCATCCATGAATCGGAAAATAACTTTATCGCATCTG--------TT 390
|||||.||.||||||...|||||.|||||||||||.|||| ||
BL03663___mut 349 AAAGGGATTCATGAAAATGAAAACAACTTTATCGCCTCTGTCAGTAAATT 398
BSNT_02754___ 391 TCAGCCTGCTCGAACAGATACGGACTTGCGCTGTCTGATTTAACAACGGG 440
||||| |.|.||||||.||.||..|.||||||||.||.||.||
BL03663___mut 399 TCAGC--------ATACATACGGGCTCGCTTTTTCTGATTTGACGACAGG 440
BSNT_02754___ 441 AGAAAATTT------GGCTGTTTTGATTGAACGGCTTGAAGACGTCATAT 484
.||.||||| |||| ||.|||.|||||||.||.|||.|.|
BL03663___mut 441 CGAGAATTTAGTAACGGCT------ATCGAAAGGCTTGATGATGTCGTTT 484
BSNT_02754___ 485 CAGAAATTTATTCAGTCGGCGCACGGGAAATCGTGGTTTCA---GGAGGC 531
|.||||||||.||.|||||.|||.||||||||||.| ||| |.|..|
BL03663___mut 485 CCGAAATTTACTCTGTCGGAGCAAGGGAAATCGTCG--TCAGCCGCAACC 532
BSNT_02754___ 532 TTGGATGCCGATACA---GTGGCACAGCTGAGAGAGCGGTGCGGTGCAAC 578
| ||.|||.|.| ||.|||..|||||.||||||.|||||.||.||
BL03663___mut 533 T----TGACGAGAAAGACGTCGCAATGCTGAAAGAGCGCTGCGGCGCCAC 578
BSNT_02754___ 579 AATTTCAATTGAAGACGGAGAAACAGACGAACACGTAACGATCATTGAGC 628
.||.||..|.||.||.|.|.||.|.||.||| ||..|...|||||.|.
BL03663___mut 579 GATCTCTTTCGAGGATGAACAAGCGGATGAA---GTGCCTGGCATTGTGA 625
BSNT_02754___ 629 AC----------TTAAATA--ATGAAGATATAACAAAAACATTTCTG-CG 665
|| ..|||.| .||..||| ||.|||.|| .|
BL03663___mut 626 ACGGACTGGGGTCCAAAGAGCTTGTCGAT---------ACGTTTATGAGG 666
BSNT_02754___ 666 CTTATATACG--TATTTGAAAAGAACCCAAAAGCGCAGCCTTGATCATCT 713
||| |||| ||.|||||..|.||.||.||..|.|||||.||.||.||
BL03663___mut 667 CTT---TACGTCTACTTGAAGCGGACGCAGAAAAGAAGCCTCGACCACCT 713
BSNT_02754___ 714 TCAGCCCGTGCAGGTGTATGAGCTTGAGGAAGCGATGAAAATTGACTTGT 763
|||...|||.||||..||.|||||.||.||||||||||||||.||.||||
BL03663___mut 714 TCAAAACGTTCAGGCCTACGAGCTCGAAGAAGCGATGAAAATCGATTTGT 763
BSNT_02754___ 764 ACTCAAAGCGTAATCTGGAGCTGACCGAAACGATTCGTTCGAAAAATAAA 813
||||.||.||.|||||.||.|||||.||||||||.|||||||||||.|||
BL03663___mut 764 ACTCGAAACGCAATCTTGAACTGACGGAAACGATCCGTTCGAAAAACAAA 813
BSNT_02754___ 814 AAAGGCTCCCTTTTGTGGCTGCTGGATGAAACAAAAACGGCAATGGGAGG 863
||||||||.|||.|.|||||..||||||||||.||||||||.||||||||
BL03663___mut 814 AAAGGCTCGCTTCTTTGGCTTTTGGATGAAACGAAAACGGCCATGGGAGG 863
BSNT_02754___ 864 CCGGCTGCTTAAA-CAGTGGATTGACCGGCCGCTTATCAGAGTCAA---T 909
.|||||| ||||| ||.|||||.|||.|||||||.|||||| || .
BL03663___mut 864 GCGGCTG-TTAAAGCAATGGATCGACAGGCCGCTGATCAGA---AAGGGA 909
BSNT_02754___ 910 CAAATCGAAGAGCGCCAAGAAATGGTGGAAACATTGATGTCCCATTTCTT 959
||.||||||||||||||.|||||.||.|||||..||||..|||||.|.||
BL03663___mut 910 CAGATCGAAGAGCGCCAGGAAATCGTTGAAACGCTGATCGCCCATCTGTT 959
BSNT_02754___ 960 TGAACGGGAAGATCTGCGTGAACGTTTAAAAGAAGTGTATGACTTAGAAC 1009
|||.|||||||||.||||.|||||..|.||.|||||.||.|||.|.||.|
BL03663___mut 960 TGAGCGGGAAGATTTGCGCGAACGGCTGAAGGAAGTATACGACCTCGAGC 1009
BSNT_02754___ 1010 GCCTTGCCGGCCGCGTTGCATTCGGAAATGTCAATGCCCGGGATTTGATT 1059
|.||.|||||..|.||.||||.|||.||.|||||.|||.|.||||||||.
BL03663___mut 1010 GGCTCGCCGGAAGGGTCGCATACGGCAACGTCAACGCCAGAGATTTGATC 1059
BSNT_02754___ 1060 CAGCTGAAGGAATCGTTAAAGCAAGTTCCTGGCATCAAACAGCTGGT-TG 1108
|||||||||||||||.|.||.|||||.||.|.||||||||||||.|| .|
BL03663___mut 1060 CAGCTGAAGGAATCGCTGAAACAAGTCCCGGCCATCAAACAGCTTGTCGG 1109
BSNT_02754___ 1109 CTTCATTGGCTCATGACAAGGCCAAGGAACGTGCAAAGCGC--------- 1149
||.| ||| |||.|..|.||.|.| |||||||
BL03663___mut 1110 CTCC-----CTC--GACCATCCGAAAGCA-----AAAGCGCGCGCCGAGA 1147
BSNT_02754___ 1150 --ATTGACCCTTGCGGGGATGTACTTGAA-CTGCTGGAAGAAGCGCTGTA 1196
||.||.||.|||||.|||.| .||||| ||..|||||||.|||||.||
BL03663___mut 1148 AAATCGATCCGTGCGGCGATCT-TTTGAATCTTTTGGAAGACGCGCTATA 1196
BSNT_02754___ 1197 CGAAAACCCTCCTTTATCGGTAAAAGAAGGGAACCTGATTAAAGATGGTT 1246
|||.||.||.|||.|.||..|||||||.||||||.|.||.|||||.||.|
BL03663___mut 1197 CGAGAATCCGCCTCTTTCATTAAAAGAGGGGAACTTAATCAAAGACGGCT 1246
BSNT_02754___ 1247 ATAATCAA----AAGCTTGATGAATATCGTGATGCAAGCAGAAACGGAAA 1292
| |.| ||.||.||||||||..|.||.|||||||..||||||||
BL03663___mut 1247 A----CCACGCGAAACTGGATGAATACAGGGACGCAAGCAAGAACGGAAA 1292
BSNT_02754___ 1293 AGACTGGATTGCCCGCCTGGAACAGCAGGAGCGGGAATACACAGGCATTC 1342
|||||||||.||..|.||.||.||||||||.||.||.|||||.||.||.|
BL03663___mut 1293 AGACTGGATCGCAAGGCTTGAGCAGCAGGAACGCGAGTACACGGGAATCC 1342
BSNT_02754___ 1343 GCTCTTTAAAGGTCGGCTTTAATAAAGTTTTCGGTTATTACATTGAAGTG 1392
||||||||||.|||||||||||.||.||.|||||.|||||.|||||||||
BL03663___mut 1343 GCTCTTTAAAAGTCGGCTTTAACAAGGTGTTCGGCTATTATATTGAAGTG 1392
BSNT_02754___ 1393 ACTAAAGCAAACTTGCATTTGCTTGAGGAAGGGCGTTATGAGCGGAAGCA 1442
||.|||||.|||.|.|||.|||||||.|||||.||.|||||.||||||||
BL03663___mut 1393 ACGAAAGCGAACATCCATCTGCTTGAAGAAGGCCGCTATGAACGGAAGCA 1442
BSNT_02754___ 1443 GACGTTAACCAATGCCGAGCGCTACATTACACCTGAATTAAAAGAAAAAG 1492
||||.|.||||||||.||.||||||||.||.||.||..|.||||||||||
BL03663___mut 1443 GACGCTGACCAATGCAGAACGCTACATCACGCCGGAGCTGAAAGAAAAAG 1492
BSNT_02754___ 1493 AAGCGCTCATTTTAGAGGCGGAAAATAACATCTGTGAGCTGGAGTACGAG 1542
||||.||.|||.|.||.||||||||.||.||.||.|||||||||||.|||
BL03663___mut 1493 AAGCCCTGATTCTCGAAGCGGAAAACAATATTTGCGAGCTGGAGTATGAG 1542
BSNT_02754___ 1543 CTGTTTACCGAGCTACGCGAG-AAAGTGAAGCAGTATATTCCGCGGCTGC 1591
||||||.|||||||.||| || ||.||||||.|.|||||.|||||..|||
BL03663___mut 1543 CTGTTTTCCGAGCTTCGC-AGCAAGGTGAAGGAATATATCCCGCGCTTGC 1591
BSNT_02754___ 1592 AGCAGCTTGCAAAACAGATGAGCGAGCTGGACGCACTGCAATGCTTTGCG 1641
|||||||.||||||..||||||||||||.||.|..||.|||||.||||||
BL03663___mut 1592 AGCAGCTGGCAAAAATGATGAGCGAGCTTGATGTGCTCCAATGTTTTGCG 1641
BSNT_02754___ 1642 ACAATCAGTGAAAATCGTCACTACACGAAACCAGAGTTCTCTAAAGATGA 1691
||.|||||.|||||.||.|||||....||.||.|||||.|| .|||||
BL03663___mut 1642 ACGATCAGCGAAAACCGGCACTATGTTAAGCCGGAGTTTTC---CGATGA 1688
BSNT_02754___ 1692 AGTCG---AAGTGATTGAAGGCAGACACCCGGTTGTTGAAAAAGTCATGG 1738
.|||| |.|||||.||.||..|.||.|||||.||.|||||.||.||||
BL03663___mut 1689 TGTCGTTCAGGTGATCGACGGACGGCATCCGGTCGTAGAAAAGGTGATGG 1738
BSNT_02754___ 1739 ACAGCCAGGAATATGTCCCGAATAACTGTATGATGGGCGATAACAGACAA 1788
||||||||...||.||.|||||.|.||||...||||||.|...|||.||.
BL03663___mut 1739 ACAGCCAGTCTTACGTTCCGAACAGCTGTGAAATGGGCAAAGGCAGGCAG 1788
BSNT_02754___ 1789 ATGCTTCTCATTACAGGTCCAAACATGTCAGGGAAAAGCACGTATATGAG 1838
||||||.|.||.||.||.||.||.|||||.||||||||||||||||||||
BL03663___mut 1789 ATGCTTTTAATCACCGGGCCGAATATGTCCGGGAAAAGCACGTATATGAG 1838
BSNT_02754___ 1839 ACAAATCGCGCTCATTTCCATTATGGCGCAAATCGGCTGCTTTGTACCCG 1888
|||.||.|||||.||.||||||.|||||||.||||||||||||||.||.|
BL03663___mut 1839 ACAGATGGCGCTGATCTCCATTTTGGCGCAGATCGGCTGCTTTGTTCCTG 1888
BSNT_02754___ 1889 CGAAAAAAGCGGTGCTTCCGATTTTCGATCAAATTTTTACGCGAATCGGC 1938
||||||||||||||||.|||||.||.|||||.||.||||||.||||.|||
BL03663___mut 1889 CGAAAAAAGCGGTGCTGCCGATCTTTGATCAGATCTTTACGAGAATTGGC 1938
BSNT_02754___ 1939 GCTGCAGATGATTTGATTTCCGGACAAAGTACATTTATGGTAGAAATGCT 1988
||.||.||||||.|.||.||||||||.||.||.||||||||.||||||||
BL03663___mut 1939 GCAGCGGATGATCTTATATCCGGACAGAGCACGTTTATGGTGGAAATGCT 1988
BSNT_02754___ 1989 TGAAGCGAAAAATGCGATTGTCAACGCGACGAAAAACAGCCTCATTCTGT 2038
||||||.|||||.|||||.|||.|.|||||||||||||||.|.|||.|.|
BL03663___mut 1989 TGAAGCCAAAAACGCGATCGTCCATGCGACGAAAAACAGCTTGATTTTAT 2038
BSNT_02754___ 2039 TTGATGAAATCGGGCGGGGAACGTCCACTTATGACGGCATGGCGCTGGCA 2088
||||.||||||||.|||||.|||||||||||.|||||.||||||||.|||
BL03663___mut 2039 TTGACGAAATCGGCCGGGGTACGTCCACTTACGACGGAATGGCGCTTGCA 2088
BSNT_02754___ 2089 CAGGCGATTATTGAATATGTTCACGATCACATCGGCGCCAAGACGCTGTT 2138
||.|||||.||.||.||.||||||||.|||||||||||.|||||..|.||
BL03663___mut 2089 CAAGCGATCATCGAGTACGTTCACGAGCACATCGGCGCGAAGACTTTATT 2138
BSNT_02754___ 2139 CAGCACACACTATCACGAGCTGACCGT-TCTTGAGGACAAGCTACCCCAG 2187
...|||.|||||.|||||||||| ||| .|||||.||.|||||...|.|.
BL03663___mut 2139 TTCCACTCACTACCACGAGCTGA-CGTCCCTTGAAGAAAAGCTGGACGAT 2187
BSNT_02754___ 2188 CTGAAAAACGTTCATGTTCGCGCTGAAGAATATAACGGAACGGTTGTCTT 2237
.||||.||.||.||.|||||.||.||||||||..|.||||.|||.||.||
BL03663___mut 2188 TTGAAGAATGTCCACGTTCGTGCGGAAGAATACGAAGGAAAGGTCGTTTT 2237
BSNT_02754___ 2238 TCTTCATCAAATTAAAGAAGGTGCCGCTGATAAAAGCTATGGTATCCATG 2287
.|||||.||.||.||||||||.||.||.|||||||||||.||||||||||
BL03663___mut 2238 CCTTCACCAGATAAAAGAAGGAGCAGCAGATAAAAGCTACGGTATCCATG 2287
BSNT_02754___ 2288 TAGCTCAGCTTGCCGAACTGCCGGGAGATCTGAT-TGC-GCGCGCTCAAG 2335
|.||.|||||.||.|||.||||.|..|.|.|||| .|| |.||| ||.
BL03663___mut 2288 TCGCGCAGCTGGCTGAATTGCCCGACGGTTTGATCAGCAGGGCG---AAA 2334
BSNT_02754___ 2336 A-TATTTTAAAAGAGCTTGAGCATTCAGG----AAACAAACCG------- 2373
| .||..|.|||||.|||| |.||.|| |||.||.|||
BL03663___mut 2335 ACGATCCTGAAAGAACTTG---AATCCGGCGCAAAAGAAGCCGCTCCATC 2381
BSNT_02754___ 2374 -------------------GAAGTGCCGG-TGCAGAAACCTCAGGTGA-- 2401
.|||.|.||| .|.||||.||.| ||.||
BL03663___mut 2382 AACGGCACCGAATATGGTAAAAGAGGCGGCGGAAGAAGCCGC-GGCGACT 2430
BSNT_02754___ 2402 ----AAGAAGAGCCGGCACAGCTGTCCTTTTTTGACGAAGCGGAAAAGCC 2447
.|||..|.|||||.||||||||.|||||||| || ||||.|||||
BL03663___mut 2431 GTTGCAGATCAACCGGCCCAGCTGTCATTTTTTGA-GA--CGGACAAGCC 2477
BSNT_02754___ 2448 GGCTGAAACA---CCAAAGCTTTCAAAAAAAGAAAAGCAAG-TGAT---- 2489
....||||.| .|.|||||.||.||||||| ||||.| ||.|
BL03663___mut 2478 AATAGAAAAAGAGACGAAGCTCTCCAAAAAAG---AGCAGGCTGTTTTAG 2524
BSNT_02754___ 2490 -CGATGCTTTCAAATCACTTAATATACTGGATATGACACCGCTTGAAGCG 2538
||| .||.|||.|..|..||.|.||.||||||||.||..|..|||..
BL03663___mut 2525 CCGA---ATTTAAAGCGATGGATCTGCTCGATATGACGCCTATACAAGTC 2571
BSNT_02754___ 2539 ATGAATGAAATGTACAAGCTGCAAAAGAAATTACATTAA 2577
|||||||||.||||||.|||||||||.||||||.|.|||
BL03663___mut 2572 ATGAATGAACTGTACAGGCTGCAAAAAAAATTAAAGTAA 2610
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