Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03767 and BL03677

See Amino acid alignment / Visit BSNT_03767 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_03767___glyS.1.5803.seq
#    -bsequence dna-align/BL03677___glyS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03767___glyS-BL03677___glyS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03767___glyS-BL03677___glyS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03767___glyS
# 2: BL03677___glyS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2116
# Identity:    1491/2116 (70.5%)
# Similarity:  1491/2116 (70.5%)
# Gaps:         152/2116 ( 7.2%)
# Score: 5002.5
# 
#
#=======================================

BSNT_03767___      1 ATGAGTAAACAGGATTTACTTTTAGAGATCGGATTAGAGGAAATGCCGGC     50
                     ||||||||.||.|||||.||||||||.|||||||||||.|||||||||||
BL03677___gly      1 ATGAGTAATCAAGATTTGCTTTTAGAAATCGGATTAGAAGAAATGCCGGC     50

BSNT_03767___     51 GCGCTTTTTGAATGAAAGCATGGTTCAGCTTGGCGACAAGCTGACAGGCT    100
                     ||||||..||.||||.||||||..||||||.||.||.||||||..|.|||
BL03677___gly     51 GCGCTTCATGCATGACAGCATGACTCAGCTGGGTGAGAAGCTGGAAAGCT    100

BSNT_03767___    101 GGCTTAAAGAAAAAAATATTACTCACGGTGAAGTGAAACTCTTCAATACA    150
                     ||||.||.||||||||||||.|...||||...||.||.||.|..||..|.
BL03677___gly    101 GGCTCAAGGAAAAAAATATTGCCTTCGGTTCCGTCAAGCTGTATAACTCC    150

BSNT_03767___    151 CCGAGACGTCTTGCTGTGTTCGTTAAGGGTGTCGCAGAAAAGCAGGATGA    200
                     ||.|||.|.||.||.||..|.||..||...||.||.||.|||||||||||
BL03677___gly    151 CCTAGAAGACTGGCCGTTCTTGTCGAGAACGTGGCGGAGAAGCAGGATGA    200

BSNT_03767___    201 TATAAAAGAAGAAGCAAAAGGACCTGCGAAAAAAATTGCCCTTGATGCGG    250
                     |.|.|||||||||||.||||||||.||.||.|||||.||||||||.|...
BL03677___gly    201 TGTGAAAGAAGAAGCGAAAGGACCGGCAAAGAAAATCGCCCTTGACGAAA    250

BSNT_03767___    251 ACGG-GAACTGGACAAAAGCGGCAATCGGCTTTTCAAAAGGCCAAGGCGC    299
                     |||| ||| ||||||||.|||||.||||||||||||...||.|||||.||
BL03677___gly    251 ACGGCGAA-TGGACAAAGGCGGCCATCGGCTTTTCACGGGGGCAAGGAGC    299

BSNT_03767___    300 GAATGTGGAAGACCTGTACATCAAAGAAGTAAAAGGCATAGAGTATGTAT    349
                     .|.|..||||||..||||..|.|||||..|.|||||.|..||.|||||||
BL03677___gly    300 AAGTCCGGAAGATTTGTATTTTAAAGACATCAAAGGAACGGAATATGTAT    349

BSNT_03767___    350 TCGTGCAAAAATTCCAAGCCGGCCAAGAAACGAAGTCGCTTCTGCCAGAA    399
                     |.|||||||||||||||...|||||.||.|||...||..|.||.||.||.
BL03677___gly    350 TTGTGCAAAAATTCCAAAAAGGCCAGGATACGTTTTCATTGCTTCCTGAG    399

BSNT_03767___    400 TTGAGCGGTTTAATTACAAGCTTGCATTTCCCGAAAAACATGCGCTGGGG    449
                     .|..|||.|||..|.||||||.|.||.||.||||||||||||||||||||
BL03677___gly    400 CTCCGCGATTTGGTGACAAGCCTCCACTTTCCGAAAAACATGCGCTGGGG    449

BSNT_03767___    450 AAATGAAGATTTGCGTTATATCCGACCGATCAAATGGATTGTCGCATTAT    499
                     .|..||||||||....||||||.|.|||||.||||||||.|||||..|.|
BL03677___gly    450 CAGCGAAGATTTAAAATATATCAGGCCGATTAAATGGATCGTCGCGCTGT    499

BSNT_03767___    500 TTGGACAG-GATGTCATTCCATTTTCGATCACAAACGTTGAGTCTGGACG    548
                     |.||| || ||.|||.||||.|||||..||.|..|.||.||..|.|||||
BL03677___gly    500 TCGGA-AGTGAAGTCGTTCCGTTTTCAGTCGCTCATGTCGAAACCGGACG    548

BSNT_03767___    549 GACAACACAGGGACATCGTTTCCTCGGACATGAAGTGTC--AATTGA-AT    595
                     .|||||.||||||||.||.|||||||||.|.|.||   |  |.|||| ..
BL03677___gly    549 CACAACGCAGGGACACCGCTTCCTCGGAAAAGCAG---CCGACTTGAGCG    595

BSNT_03767___    596 CACCTTCAGCTTATGAAGAG-CAGCT-GAAAGAACAGCATGTTATTGCTG    643
                     |||||||.|..||.||||.| || || ||||| .|||..|||.|||||.|
BL03677___gly    596 CACCTTCTGAATACGAAGCGACA-CTGGAAAG-CCAGTTTGTGATTGCCG    643

BSNT_03767___    644 ATCCTAGCGTC----CGAAAGCAAATGAT--TCAATCTCAGCTGGAAGCA    687
                     |||    ||.|    ||.|||||..||||  |.||  .|||||.||.|.|
BL03677___gly    644 ATC----CGGCCAAACGGAAGCAGCTGATCGTTAA--GCAGCTTGACGAA    687

BSNT_03767___    688 ATGGCTGCTGAAAACAATTGGAGCATTCC-AGTTGACGAAGACCTTCTTG    736
                     .||||||||||.||....|||..|||||| || .|||||.||.||.||.|
BL03677___gly    688 CTGGCTGCTGAGAAGTCCTGGGACATTCCGAG-AGACGAGGATCTGCTGG    736

BSNT_03767___    737 ATGAAGTGAATCATTTAGTAGAATACCCGACAGCTCTTTACGGTTCATTT    786
                     ||||.||.||.|||.|.||.|||||.||.||.|..||.|.||||||.|..
BL03677___gly    737 ATGAGGTCAACCATCTGGTTGAATATCCAACGGTACTGTTCGGTTCTTAC    786

BSNT_03767___    787 GAATCGGAGTTTCTGTCAATTCCTGAAGAAGTGCTTGTCACGACAATGAA    836
                     |||..|||.|||||..|||||||||||||.|||||.||.||.||||||||
BL03677___gly    787 GAAGAGGAATTTCTCGCAATTCCTGAAGAGGTGCTCGTGACAACAATGAA    836

BSNT_03767___    837 AGAGCATCAGCGCTACTTCCCTGTCAAAGACAAAAACGGTGACCTGCTGC    886
                     ||||||||||||.||.||||||||||||||..|||||||...|.||||.|
BL03677___gly    837 AGAGCATCAGCGTTATTTCCCTGTCAAAGATGAAAACGGCAGCTTGCTTC    886

BSNT_03767___    887 CTCACTTTATCACAGTCCGAAACGGCAACAGCCACGCGATTGAAAATGTG    936
                     ||.|||||.|.||.|||||.|||||..||||||.|||..|||||||.|||
BL03677___gly    887 CTTACTTTGTGACCGTCCGCAACGGAGACAGCCGCGCCCTTGAAAACGTG    936

BSNT_03767___    937 GCCCGAGGCAATGAAAAAGTGCTGCGCGCACGTTTATCTGATGCTTCATT    986
                     ||..||||.|||||||||||||||.|.|||.|..|.||.||.|||||.||
BL03677___gly    937 GCGAGAGGGAATGAAAAAGTGCTGAGAGCAAGGCTTTCAGACGCTTCCTT    986

BSNT_03767___    987 CTTCTACAAGGAAGATCAGAAACTAAACATTGATGCAAATGTGAAGAAGC   1036
                     ||||||.||.||||||||.|||.||||||||||.|..|||||||..||||
BL03677___gly    987 CTTCTATAAAGAAGATCAAAAATTAAACATTGACGAGAATGTGAGAAAGC   1036

BSNT_03767___   1037 TTGAAAATATCGTTTTCCATGAAGAGCTTGGTTCTCTTGCTGATAAGGTT   1086
                     |.|||||.|||||||||||||||||.||.||.||.||.|..|||||.||.
BL03677___gly   1037 TCGAAAAGATCGTTTTCCATGAAGAACTGGGGTCGCTCGGAGATAAAGTG   1086

BSNT_03767___   1087 AGAAGAGTCACATCAATCGCA--GAGAAACTTGCCGTTC-----------   1123
                     |||              ||||  |||...|||||.|..|           
BL03677___gly   1087 AGA--------------CGCACTGAGGCGCTTGCTGAACGGATCGCTGAA   1122

BSNT_03767___   1124 GTCTTCAG-GCTGATGAAGATACATTAAAACATG-TGAAGCGGGCTGCTG   1171
                     |||.||.| ||.|||.||||.||..|..|.| || |.|||||.|||||..
BL03677___gly   1123 GTCATCGGTGCCGATCAAGAGACGGTGCAGC-TGATCAAGCGCGCTGCGC   1171

BSNT_03767___   1172 AAATTTCTAAATTCGACCTTGTGACGCATATGATATATGAATTCCCTGAA   1221
                     |.|||||.|||||||||||||||||.||.|||.|.||.|||||.|||||.
BL03677___gly   1172 ACATTTCAAAATTCGACCTTGTGACACACATGGTTTACGAATTTCCTGAG   1221

BSNT_03767___   1222 CTTCAAGGAATTATGGGCGAAAAGTATGCGAGAATGCTTGGCGAAGATGA   1271
                     ||.||.||.||.|||||.|||||.||||||.|.|||||.||.||..|.||
BL03677___gly   1222 CTGCAGGGCATCATGGGTGAAAAATATGCGCGGATGCTCGGTGAGAAAGA   1271

BSNT_03767___   1272 AGCTGTGGCTGCG---GCAGTTAATGAACATTATATGCCTAGATCAGCGG   1318
                     ||..||   ||||   |||||.|||||.||.||||||||.|||..|||.|
BL03677___gly   1272 AGAAGT---TGCGCTCGCAGTCAATGAGCACTATATGCCGAGACAAGCCG   1318

BSNT_03767___   1319 GCGGAGAAACGCCTTCTACTTTCACCGGAGCTGTTGTAGCAATGGCGGAT   1368
                     |.|||.||||||||||..|..||.||||.||.||.||.|||.|||||||.
BL03677___gly   1319 GAGGACAAACGCCTTCATCAATCGCCGGCGCCGTCGTCGCATTGGCGGAC   1368

BSNT_03767___   1369 AAGCTTGACACAATCGCTTCATTCTTCTCTATCGGCGTAATTCCGACCGG   1418
                     ||.||.||.||..||||||||||||||...||||||||.||||||||.||
BL03677___gly   1369 AAACTCGATACGGTCGCTTCATTCTTCAAAATCGGCGTCATTCCGACAGG   1418

BSNT_03767___   1419 TTCCCAGGACCCTTACGGACTGCGCCGCCAAGCAAGCGGTATTGTTGCGA   1468
                     .||.|||||.||.||.||||||.|..|.||.||.|||||.||.||....|
BL03677___gly   1419 ATCTCAGGATCCGTATGGACTGAGAAGACAGGCGAGCGGCATCGTCCAAA   1468

BSNT_03767___   1469 TTCTTCTTGACCGCAACTGGGGAATTTCATTTGAAGAGCTGCTTACTTT-   1517
                     |.||.||||||||.||||||||.||||||||..||||.|||..|.|.|| 
BL03677___gly   1469 TCCTGCTTGACCGGAACTGGGGCATTTCATTCAAAGAACTGGCTGCGTTT   1518

BSNT_03767___   1518 --CGTACA--AACCGATAAAGAAATTGAACTGCTGGATTTCTTCACTCAG   1563
                       ||.|||  ||.|     |.|.|..||||||||.||.|||||.|..|||
BL03677___gly   1519 GCCGGACAGGAAGC-----AAACAGCGAACTGCTCGAATTCTTTAAACAG   1563

BSNT_03767___   1564 CGCTTGAAATATGTCTTGAATGCTGAACAAATCAGACATGATGTCATTGA   1613
                     |||.|.||||||||.||.|..||.|||.|.|||.||.|.||.|||.|.||
BL03677___gly   1564 CGCCTCAAATATGTATTAACAGCGGAAAACATCCGATACGACGTCGTGGA   1613

BSNT_03767___   1614 CGCCGTGCTGGAAAGCTCTGAGCTTGAGCCGTACTCTGCGCTGCATAAAG   1663
                     .||||||||.||||||.|..|.|||||||||||.||.||..|..|.||||
BL03677___gly   1614 TGCCGTGCTCGAAAGCACGAACCTTGAGCCGTATTCGGCTGTCAAAAAAG   1663

BSNT_03767___   1664 CACAAGT----------ACTGGAGCAAAAGCTTGGTGCACCTGGCTTTAA   1703
                     |....||          .|||.|||.||          |||.|..|||||
BL03677___gly   1664 CCGCCGTCCTTGAATCGGCTGCAGCCAA----------ACCGGAATTTAA   1703

BSNT_03767___   1704 GGAAACAGCCGAAGCGTTAGGC-CGAGTGATCTCTATCAGCAAA------   1746
                     .|||||.||.||||||.| ||| .|.||.||.||.|||||||||      
BL03677___gly   1704 AGAAACGGCTGAAGCGCT-GGCAAGGGTTATTTCGATCAGCAAAAAGAGC   1752

BSNT_03767___   1747 -AAAGGAGTCCGCGGAGACATTCA-GCCTGATCTGTTTGAAAA---TGAA   1791
                      |||.|||  |||     ||||.| ||.|.| |||||||||||   |.||
BL03677___gly   1753 GAAACGAG--CGC-----CATTGACGCTTCA-CTGTTTGAAAACCCTCAA   1794

BSNT_03767___   1792 TACGAAG-------CAAAACTGTTTGATGCCTACCAAACAGCGAAGCAAA   1834
                     .|.||.|       ||||.|| |.|||.||.|     .||| |.||||||
BL03677___gly   1795 GAAGAGGAGCTTTTCAAAGCT-TATGAGGCGT-----GCAG-GCAGCAAA   1837

BSNT_03767___   1835 ATCTGCAGGAAAACTTCAGCAA--AAAAGATTATGAGGCGGCGCTTGCTT   1882
                          .||..|..|||.|.|||  |||||||||||||  |||||   |||
BL03677___gly   1838 -----TAGAGACCCTTTACCAAGCAAAAGATTATGAG--GGCGC---CTT   1877

BSNT_03767___   1883 CACT----TG---CAGCCTTAAAAGAACCGATCGATGCTTACTTCGATCA   1925
                     ||.|    ||   .|||  |.|||||.|||||.||.||.||.||.|||||
BL03677___gly   1878 CAGTGAGCTGTCCAAGC--TGAAAGAGCCGATTGAAGCGTATTTTGATCA   1925

BSNT_03767___   1926 TACAATGGTTATA-GCGGATAATGAGTCATTAAAGGCAAATCGTTTAGCG   1974
                     |||.|||| ||.| ||.||..||||...||||||.|||||.||..|.|||
BL03677___gly   1926 TACGATGG-TACATGCCGAAGATGAAAGATTAAAAGCAAACCGCCTGGCG   1974

BSNT_03767___   1975 CAAATGGTAAGCTTGGCGGATGAGATCAAGTCCTTTGCGAATATGAATGC   2024
                     |||||||.||||||||||||...||||...||.|||||.||.||.|||||
BL03677___gly   1975 CAAATGGCAAGCTTGGCGGAGCTGATCCGATCTTTTGCAAACATCAATGC   2024

BSNT_03767___   2025 CCTTATTGTAAAATAA   2040
                     |.|.||||||||||||
BL03677___gly   2025 CATCATTGTAAAATAA   2040


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