Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03754 and BL03696
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:47
# Commandline: needle
# -asequence dna-align/BSNT_03754___yqfN.1.5803.seq
# -bsequence dna-align/BL03696___yqfN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03754___yqfN-BL03696___yqfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03754___yqfN-BL03696___yqfN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03754___yqfN
# 2: BL03696___yqfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 732
# Identity: 479/732 (65.4%)
# Similarity: 479/732 (65.4%)
# Gaps: 99/732 (13.5%)
# Score: 1690.0
#
#
#=======================================
BSNT_03754___ 0 -------------------------------------------------- 0
BL03696___yqf 1 GTGAATGAATTGAAGTTATCGAAAAGGCTGCAGACTGTGGCGGAATACAT 50
BSNT_03754___ 1 ----------------ATGGCCGATATCGGCTCTGATCACGCATACCTTC 34
.||||.||||||||.||||||||.||.||..|.|
BL03696___yqf 51 AACAAAAGGGGCTGTTGTGGCTGATATCGGGTCTGATCATGCGTATTTGC 100
BSNT_03754___ 35 CTTGTTATGCGGTGCTGAATCATAAAGCC-----AGCGGGGCGATTGCCG 79
||||.|||...|||||||||| ||| ||||..|||||.||||
BL03696___yqf 101 CTTGCTATTGTGTGCTGAATC-----GCCTGGCAAGCGCCGCGATCGCCG 145
BSNT_03754___ 80 GAGAAATAACAGACGGCCCATTTTTGTCTGCAAAGCGGCAGGTTGAAAAA 129
|||||||.|||||.||.||.|||.|.|||||.||.|.|||||||||.|||
BL03696___yqf 146 GAGAAATCACAGATGGTCCGTTTCTTTCTGCGAAACAGCAGGTTGAGAAA 195
BSNT_03754___ 130 --TCAGGCTTAAACTCGCACATTTCTGTAAGGCAGGGAGACGGACTGGAA 177
.||| ||||..||||.|||.||.||.|||.|.||||||||.||.|||
BL03696___yqf 196 CTGCAG--TTAAGTTCGCTCATATCCGTCAGGAAAGGAGACGGGCTTGAA 243
BSNT_03754___ 178 GTGATTAAAAAAGGTGAAGCTGATGCCATTACGATTGCCGGAATGGGCGG 227
||||||.||||.||.|||||.||||..||.|||||||||||||||||.||
BL03696___yqf 244 GTGATTGAAAAGGGCGAAGCCGATGTGATCACGATTGCCGGAATGGGTGG 293
BSNT_03754___ 228 GGCTTTGATCGCTCACATTTTAGAAGCGGGCAAAGACAAATTAACGGGGA 277
..|..|.||.|||||||||.||.||.|||||||.||.||..|..|.||.|
BL03696___yqf 294 CTCGCTCATTGCTCACATTCTAAAAACGGGCAAGGATAAGCTCTCAGGTA 343
BSNT_03754___ 278 AGGAACGGCTCATTTTACAGCCGAATATTCATGCTGTTCATATCAGGGAA 327
||||.||..|..||||||||||||||||.||.|||...|||||.||.||.
BL03696___yqf 344 AGGAGCGTTTGGTTTTACAGCCGAATATCCACGCTCACCATATTAGAGAG 393
BSNT_03754___ 328 TGGCTTTATAAAGAAGGATATGCGCTGATAGATGAGGTAATCCTTGAAGA 377
|||||.||..|.|||||.|||||.|||||..||||.|..|||||||||||
BL03696___yqf 394 TGGCTCTACCAGGAAGGCTATGCACTGATCAATGAAGAGATCCTTGAAGA 443
BSNT_03754___ 378 GGACGGAAAGTGCTATGAGGTGCTGGTAGCAGAAGCGGGAGACAGGGATG 427
.|||||.||||.|||||||||.||.||.||.||||||||.||..||||||
BL03696___yqf 444 AGACGGCAAGTACTATGAGGTTCTCGTGGCTGAAGCGGGCGATCGGGATG 493
BSNT_03754___ 428 CGGCTTATGACGGTATTTCTTTATCAGCCGGGATGCTCGTCGGCCCTTTC 477
|||||||.||.||..||||.||..|.||.||.|||||.||||||||.||.
BL03696___yqf 494 CGGCTTACGATGGGGTTTCCTTTGCGGCAGGCATGCTTGTCGGCCCATTT 543
BSNT_03754___ 478 TTGGCAAAAGAAAAAAATGCTGTCTTTTTGAAAAAGTGGACACAAGAGCT 527
||||..||||||.||||||.|||.|||.|.|||||.|||.|.||.|||||
BL03696___yqf 544 TTGGTCAAAGAACAAAATGATGTTTTTATCAAAAAATGGTCGCAGGAGCT 593
BSNT_03754___ 528 TCAGCACACTCAAAGCATTTATGAACAGATCAGCCAAGCGGCGGATACAG 577
..|.||.||..|||.|||.|||..|||.|| ..|||||||...| |.|
BL03696___yqf 594 GAAACATACGGAAAACATCTATCGACAAAT---TGAAGCGGCTCCT-CCG 639
BSNT_03754___ 578 AG----CAAAACAAACAAAAATTAAAGGAGCTCTCCGATCGAATGGAGCT 623
|| .||||...|||||||||....|||||.||.||.||.||.|||.|
BL03696___yqf 640 AGTGAAGAAAATCGACAAAAATTGCTTGAGCTGTCAGAACGGATAGAGAT 689
BSNT_03754___ 624 GTTAAAGGAGGTAAT----CGATCATGGATAA 651
.||||||||||||.| .|||.|
BL03696___yqf 690 CTTAAAGGAGGTACTTAGAAGATGA------- 714
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