Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03752 and BL03697

See Amino acid alignment / Visit BSNT_03752 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:47
# Commandline: needle
#    -asequence dna-align/BSNT_03752___yqfO.1.5803.seq
#    -bsequence dna-align/BL03697___yqfO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03752___yqfO-BL03697___yqfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03752___yqfO-BL03697___yqfO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03752___yqfO
# 2: BL03697___yqfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1171
# Identity:     830/1171 (70.9%)
# Similarity:   830/1171 (70.9%)
# Gaps:          98/1171 ( 8.4%)
# Score: 2815.5
# 
#
#=======================================

BSNT_03752___      1 ATGGATAAAAGTG-TAAATGGGCAGCAGATCATCCAGCTGTTTGAACAAT     49
                     || ||.||||..| ||||.|||||..|.|||||.||..||||||||||.|
BL03697___yqf      1 AT-GACAAAAACGATAAACGGGCATGAAATCATTCAATTGTTTGAACAGT     49

BSNT_03752___     50 TTTCTCCGAAAGCCTAT-GCGGTTGAAGGAGATAAAATCGGCCTGCAAAT     98
                     |.||.|| .|||.||.| ||.|||||||||||||||||||||||||||||
BL03697___yqf     50 TCTCGCC-TAAGTCTTTAGCCGTTGAAGGAGATAAAATCGGCCTGCAAAT     98

BSNT_03752___     99 CGGCACTTTAAACAAA-------CCAATTAAAAATGTGATGGTTACACTT    141
                     ||||||..|.||||||       ||       |||||.|||||.||.|||
BL03697___yqf     99 CGGCACGCTGAACAAAACGGTGGCC-------AATGTCATGGTCACGCTT    141

BSNT_03752___    142 GATGTGTT---AGAGAGCGTTATCGATGAAGCGATTGAAAAAGAGGTTGA    188
                     |||||..|   |||.|..|||   |||||||||||.|.|||..|.|||||
BL03697___yqf    142 GATGTTCTCGAAGAAACGGTT---GATGAAGCGATCGCAAAGAACGTTGA    188

BSNT_03752___    189 CTTGATTATTGCACACCATCCTCCTATTTTCCGGCCGCTAAAGCATATTT    238
                     .||.||||||||.||||||||.|||.|||||.|||||||.||  |.||.|
BL03697___yqf    189 TTTAATTATTGCGCACCATCCCCCTGTTTTCAGGCCGCTGAA--ACATGT    236

BSNT_03752___    239 CA--ACAGATCAGCCTGCCGGAAGGTTAATTGAAAAGTGTTTGAAGCATG    286
                     ||  |||||||||||.|.|||||||.|.||.||||||||..|.|||||||
BL03697___yqf    237 CATCACAGATCAGCCCGGCGGAAGGCTGATCGAAAAGTGCATCAAGCATG    286

BSNT_03752___    287 ATATTGCTGTTTATGCAGCTCATACAAATTTAGACGTTGCGGACGGCGGC    336
                     ||||.||.||||||||.||||||||.|||.|.||.||.||.||||||||.
BL03697___yqf    287 ATATCGCGGTTTATGCGGCTCATACGAATCTCGATGTCGCTGACGGCGGT    336

BSNT_03752___    337 GTGAATGATTTGCTTGCTGAAGC------ATTAGAGCTGAGTGAGACGGA    380
                     ||.||.||..||||.||.|||||      ||||.||      .|.||..|
BL03697___yqf    337 GTCAACGACATGCTAGCGGAAGCGCTGGAATTAAAG------AACACAAA    380

BSNT_03752___    381 AGTGCTGGCACCTACTTATACGGATCCTCTGAAAAAGCTGGCAGTTTACG    430
                     |||.||||..||.||.|||...||.||.||||||||.||.||.||.||.|
BL03697___yqf    381 AGTTCTGGTTCCAACCTATGAAGAGCCGCTGAAAAAACTTGCCGTCTATG    430

BSNT_03752___    431 TGCCGAAGGAATATGAAGAGCAGGT---CAGAGC-CGCGGTTGGAAATGC    476
                     |.|||||.||.||||||||.|||||   ||.||| |    |||||.|.||
BL03697___yqf    431 TCCCGAAAGATTATGAAGAACAGGTACGCACAGCTC----TTGGAGACGC    476

BSNT_03752___    477 GGGGGCCGGCCATATCGGTGAATACAGCCATTGCGCGTTTTCATCTGAAG    526
                     .||.||||||||||||||.|..||||||||.||.||||||||..|.||||
BL03697___yqf    477 TGGAGCCGGCCATATCGGCGCCTACAGCCACTGTGCGTTTTCTGCAGAAG    526

BSNT_03752___    527 GAATCGGCAGCTTTAAGCC---ATTGGACGGAGCTAAGCCTTTTATCGGT    573
                     ||.||||||||||.|||||   ||..||   ||||.|.||.|||||||| 
BL03697___yqf    527 GAGTCGGCAGCTTCAAGCCGCTATCTGA---AGCTGATCCGTTTATCGG-    572

BSNT_03752___    574 GAAG-TGGGAGAGCTTGAGCTTGTTCATGAAGTAAGACTTGAGACTGTAT    622
                     .||| .|||.||||||||.|..||..|.||.||||||.|.|||||.||.|
BL03697___yqf    573 CAAGCGGGGCGAGCTTGAACGGGTCGAAGAGGTAAGAATCGAGACCGTTT    622

BSNT_03752___    623 TTCCTAAAAGC----ATCGAAAAAGCTGTTATCAACGCAATGATAAAAAG    668
                     .|||    .||    ||.||||||.|.||.|||||.||.||||...|...
BL03697___yqf    623 ATCC----GGCGGGTATTGAAAAATCCGTGATCAAAGCGATGAGTGAGGC    668

BSNT_03752___    669 CCATCCATATGAAGAAGTCGCTTACGATATCTATCCTGTCGAACAGACTC    718
                     ||||||.|||||||||||.||.|..|||||.|||||.|||||.||||.| 
BL03697___yqf    669 CCATCCGTATGAAGAAGTGGCCTTTGATATTTATCCGGTCGAGCAGAAT-    717

BSNT_03752___    719 CCGC--CGAAAAAGGGCTCGGCCGTGTCG--GAACCCTTAAAACT---GA    761
                     ||||  | ||||||||||.|||||..|||  |||   ||.||  |   ||
BL03697___yqf    718 CCGCTTC-AAAAAGGGCTGGGCCGCATCGGTGAA---TTGAA--TGAAGA    761

BSNT_03752___    762 GATGACGCTCAAGGAATTCGCTTTATTTGTGAAAGACAAGCTTGACGTCA    811
                     ||||||.|||.|.|..||.||...||.||||||.||.|||.|.||.|..|
BL03697___yqf    762 GATGACACTCGAAGCGTTTGCCCGATATGTGAAGGAAAAGTTGGAGGCGA    811

BSNT_03752___    812 ATGGTGTCAGAATGGTGGG------GGATGCTGACAGCATGGTGAAAAAG    855
                     |.||.|...|.||||||||      .||||| ||.|     |||||.|||
BL03697___yqf    812 ACGGAGCGCGGATGGTGGGCAAGTCTGATGC-GAAA-----GTGAAGAAG    855

BSNT_03752___    856 GTAGCTGTTCTTGGCGGAGATGGAAACAAGTATATTCATCATGCAAAACG    905
                     ||.||.||..|.|||||.||.||.|||||.||.||.||||||||||||||
BL03697___yqf    856 GTCGCCGTATTAGGCGGTGACGGCAACAAATACATCCATCATGCAAAACG    905

BSNT_03752___    906 AAAGGGAGCCGATGTTTACGTCACAGGAGATTTATACTTCCATGTGGCCC    955
                     .|.|||.||.|||||.||.|||||.|||||..|.||.||||||..|||.|
BL03697___yqf    906 TATGGGCGCTGATGTATATGTCACGGGAGACCTGTATTTCCATACGGCGC    955

BSNT_03752___    956 ATGATGCGATGATGCTTGGCCTAAATGTGGTTGATCCGGGCCATTACGCA   1005
                     |.||.||.||||||.|.||.||.|||||.|||||.||.||||||||.||.
BL03697___yqf    956 ACGACGCCATGATGATCGGGCTGAATGTAGTTGACCCCGGCCATTATGCT   1005

BSNT_03752___   1006 GAAAAAATCATGAAAGAAGGCGTCACGAGAAAACTGACATCAATGTGTAA   1055
                     |||.|||||||||||.|.||.||..|.|.|||.||||||.|.|||||...
BL03697___yqf   1006 GAACAAATCATGAAAAACGGGGTTGCAAAAAAGCTGACAGCGATGTGCCG   1055

BSNT_03752___   1056 CGATAAAAAGTTTGACGT----GAATATCTTTGTTTCTGAAACAGATACA   1101
                     .||.|||||.|||||.||    |    |||||...||.||.||..||||.
BL03697___yqf   1056 GGAGAAAAAATTTGATGTCTCGG----TCTTTCCATCGGATACGAATACG   1101

BSNT_03752___   1102 AATCCATTTACATTTCTATAA   1122
                     |||||.|||||.|||.|||||
BL03697___yqf   1102 AATCCGTTTACGTTTGTATAA   1122


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