Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03744 and BL03700

See Amino acid alignment / Visit BSNT_03744 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03744___yqfU.1.5803.seq
#    -bsequence dna-align/BL03700___yqfU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03744___yqfU-BL03700___yqfU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03744___yqfU-BL03700___yqfU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03744___yqfU
# 2: BL03700___yqfU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     658/914 (72.0%)
# Similarity:   658/914 (72.0%)
# Gaps:          61/914 ( 6.7%)
# Score: 2327.5
# 
#
#=======================================

BSNT_03744___      1 ATGAC-----CCCAACAAAACAACATAAGAAAGAAACA------------     33
                     |||.|     |.||  ||||||.|||||.||||||.||            
BL03700___yqf      1 ATGGCAAAGACTCA--AAAACAGCATAAAAAAGAATCAGCGGTCAAAAAA     48

BSNT_03744___     34 ---TTTACCCATTTTATTTTCAGGGTCTTTATGATTCTGGTAGGAGCTGC     80
                        |||               |||.||.|.||||||||..|.||.|||||
BL03700___yqf     49 GCGTTT---------------AGGATCGTCATGATTCTTATCGGGGCTGC     83

BSNT_03744___     81 ATCTGCGGCTGTAAGTATTGAATTATTTTTAATCCCCAATGATTTTATTG    130
                     .|.|||.||.|..||.||.|||||||||.||.|.||.|||.|..|.||.|
BL03700___yqf     84 CTGTGCTGCCGCCAGCATCGAATTATTTCTAGTGCCGAATAACATCATCG    133

BSNT_03744___    131 ATGGCGGGATTATCGGTGTATCACTTATTTTAGACCACCTCTTTATGTCA    180
                     |.||.||.||||||||..|.|||.|.||.||.|||.|||||||||    |
BL03700___yqf    134 ACGGGGGCATTATCGGCATTTCATTAATATTGGACTACCTCTTTA----A    179

BSNT_03744___    181 ----AACCCCTTTCTCAATTTCGCTTTATTCGTTGTCATATTAAATATTC    226
                         |||||.|.|.||||.||||||.|..||||.|||.|..|.||.||.|
BL03700___yqf    180 AGATAACCCGTATATCAACTTCGCTCTGCTCGTCGTCGTTCTCAACATCC    229

BSNT_03744___    227 CTTTTATGATCTTC-GGATATAAATATATCGGTAAGACCTTTCTAGTCTC    275
                     |.|||||| |.||| ||.||.|||.|.|||||.||.||.||..||.|.||
BL03700___yqf    230 CGTTTATG-TTTTCAGGCTACAAACACATCGGAAAAACGTTCTTAATTTC    278

BSNT_03744___    276 TACGTTTATAGGGATTGTCGGACTTG-CCGTTATTGAATCCTCAC---TT    321
                     .||..|.||.||.||.|||.| |||| |..||||||||   .|||   |.
BL03700___yqf    279 AACACTAATCGGAATCGTCAG-CTTGTCAATTATTGAA---ACACTGTTG    324

BSNT_03744___    322 CACCATGTAGAAGCCATTACAACCCAGCCTATTTTGGCTACTGTGTTCGG    371
                     ||.||||||||||...||||.||.|||||..|..||||..|.||.|||||
BL03700___yqf    325 CATCATGTAGAAGGGGTTACGACTCAGCCCGTCCTGGCAGCCGTATTCGG    374

BSNT_03744___    372 AGGTCTTTTACTCGGCTTTGGCGTCGGGCTTGTTATTCGAAACGGAGGTT    421
                     .||||||.|.|||||.||.|||||.||||||||||||||.|||||.||||
BL03700___yqf    375 CGGTCTTCTGCTCGGATTCGGCGTAGGGCTTGTTATTCGTAACGGCGGTT    424

BSNT_03744___    422 CAATGGATGGTACAGAAATTCTCGGTATTTTGCTGACCAAAAAACTCCCG    471
                     |.||||||||.||.||.||.|||||.||||||||.||.|||||.||.|||
BL03700___yqf    425 CTATGGATGGAACTGAGATACTCGGCATTTTGCTTACGAAAAAGCTGCCG    474

BSNT_03744___    472 TTTTCTGTAGGTGAGTTCGTTATGTTCATCAATGTGTTCATTTT--CATT    519
                     ||||||||.||.||.||.||.||||||.|||||||.||.|||||  ||  
BL03700___yqf    475 TTTTCTGTCGGCGAATTTGTCATGTTCGTCAATGTCTTTATTTTTGCA--    522

BSNT_03744___    520 TGGGC-AGTTTTTGTGTTCGGTCCTGAGCAAGCGATGTACTCATTCATGA    568
                     ||||| || .||||||||.||.|.||||||.||.||||..||..|.||||
BL03700___yqf    523 TGGGCGAG-CTTTGTGTTTGGCCTTGAGCAGGCTATGTTTTCGGTTATGA    571

BSNT_03744___    569 CTTATTATATTGCGATGAAAACGATTGATGCTGTGATCCAAGGGCTTGAT    618
                     |.|||||||||||||||||.|||||||||||.||.||.|||||||||||.
BL03700___yqf    572 CATATTATATTGCGATGAAGACGATTGATGCCGTCATTCAAGGGCTTGAA    621

BSNT_03744___    619 GAAACAAAAGCTGTCATTATTGTGTCTGAGCAGTATGATGAGATTTCCGA    668
                     ||.||.|||||.|||||.||.||.||.||.||.||.||.|||||||||||
BL03700___yqf    622 GAGACGAAAGCGGTCATCATCGTTTCAGATCAATACGAGGAGATTTCCGA    671

BSNT_03744___    669 CGCGATTTTGCACCGTCTCGGTCGGGGCACAACGAAGCTGAAGGGGAAAG    718
                     ..||.|..||||.||.|||||.|||||.||.||.|||||.||.|||||||
BL03700___yqf    672 TTCGCTGCTGCATCGCCTCGGCCGGGGAACGACCAAGCTCAAAGGGAAAG    721

BSNT_03744___    719 GCGGATATACGGACGAAGAAAAAGACGTAATTTACGCGGTTGTCACAAGG    768
                     ||||.|||.|.|||||.||.|.|||.||.|||||.||.|||||.||.|||
BL03700___yqf    722 GCGGCTATTCCGACGAGGACACAGAAGTGATTTATGCCGTTGTGACCAGG    771

BSNT_03744___    769 CTGGAAGTGACAAAGCTCAAATCGATCGTGTTTGAAGTTGATCAAAATGC    818
                     ||.||||||||.|||||.||||||||.||.||.||..|||||||.|||||
BL03700___yqf    772 CTTGAAGTGACGAAGCTGAAATCGATTGTCTTCGATATTGATCACAATGC    821

BSNT_03744___    819 ATTCATAACAATTATGAATACTCATGAAACGAGAGGCGGAAAATTCAAAA    868
                     .||.|||||.||||||.|.||.||.||||||.|.||.|||||.||.||||
BL03700___yqf    822 TTTTATAACGATTATGGACACGCACGAAACGCGCGGAGGAAAGTTTAAAA    871

BSNT_03744___    869 ACGCAATCCACTAG    882
                     ||||.|||||.|||
BL03700___yqf    872 ACGCCATCCATTAG    885


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03744 and BL03700

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
