Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03727 and BL03714

See Amino acid alignment / Visit BSNT_03727 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:45
# Commandline: needle
#    -asequence dna-align/BSNT_03727___pstBA.1.5803.seq
#    -bsequence dna-align/BL03714___pstBA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03727___pstBA-BL03714___pstBA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03727___pstBA-BL03714___pstBA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03727___pstBA
# 2: BL03714___pstBA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity:     608/901 (67.5%)
# Similarity:   608/901 (67.5%)
# Gaps:         101/901 (11.2%)
# Score: 1955.5
# 
#
#=======================================

BSNT_03727___      1 ATGGCTTGGCACGATGATCTACAAGAAGCTTACGGCAAATTAGAACGGAA     50
                     ||||||   ||.|.|       .|||.||   |||    ||   ..||||
BL03714___pst      1 ATGGCT---CAGGTT-------CAGATGC---CGG----TT---TTGGAA     30

BSNT_03727___     51 AGAG---GCGAAAAACATGTCTGAA-CAAATGGTAAAAGAAAAACCTGAG     96
                     |..|   ||||.|   ||.||.||| |                       
BL03714___pst     31 ACCGTGCGCGACA---ATATCGGAATC-----------------------     54

BSNT_03727___     97 CGAGCTGTTATTGTTCC--GAAGCAGA---ACCACGTGCTTGAGGTCAAA    141
                        |||    ..|||||  ||||| ||   |.||..|..|.||.||.|||
BL03714___pst     55 ---GCT----CCGTTCCCTGAAGC-GAAAGAGCATATTTTAGAAGTGAAA     96

BSNT_03727___    142 GATCTGTCTATTTTTTACGGAAATAAACAAGCCGTTCA---TCATGTAAA    188
                     .||.|...|||||..||.|||.|.||.|..|||| |||   .|||.|  .
BL03714___pst     97 AATTTAAATATTTACTATGGAGAAAAGCGGGCCG-TCAACGACATTT--C    143

BSNT_03727___    189 CATGGATATTGAAAAAAATGCGGTGACTGCTTTAATTGGGCCGTCGGGAT    238
                     ||||..||||||.|||.|||||||.||.|||||.||.||.|||||.||.|
BL03714___pst    144 CATGCGTATTGACAAACATGCGGTCACGGCTTTGATCGGTCCGTCAGGCT    193

BSNT_03727___    239 GCGGAAAATCTACTTTTTTGAGAAATATTAACCGAATGAACGATTTAATT    288
                     ||||||||||.||||||||.||||..||.|||||.|||||||||.|.|||
BL03714___pst    194 GCGGAAAATCGACTTTTTTAAGAAGCATCAACCGGATGAACGATCTGATT    243

BSNT_03727___    289 CCATCTGCAAGA----GCGGAAGGTGAAATCCTTTATGAAGGATTAAATA    334
                     |||||.||.|||    .||||    |||||.|..||||||||..|.||.|
BL03714___pst    244 CCATCAGCCAGAACATCCGGA----GAAATACGGTATGAAGGGCTTAACA    289

BSNT_03727___    335 T-----ATTGGGCGGCAATATTAACGTTGTCAGCTTGAGAAGAGAAATCG    379
                     |     |||     .||||||.||.||.||||...|||||||.||.||||
BL03714___pst    290 TCCTTGATT-----CCAATATCAATGTCGTCAATCTGAGAAGGGAGATCG    334

BSNT_03727___    380 GAATGGTTTTCCAAAAACCAAATCCATTTCCGAAATCGATCTA-TGCGAA    428
                     |.|||||.||.||.||.||.||.||.|||||.||||||||.|| .|| ||
BL03714___pst    335 GCATGGTATTTCAGAAGCCGAACCCCTTTCCAAAATCGATTTACAGC-AA    383

BSNT_03727___    429 TATCACACATGCATTGAAATATGCCGGAGAGCGGAATAAAGCTGTTTTAG    478
                     .||.||.||.|||||.||||||||.||.||.|||...|||.|.||..|.|
BL03714___pst    384 CATTACCCACGCATTAAAATATGCGGGCGAACGGCGGAAATCCGTGCTTG    433

BSNT_03727___    479 ATGGAATTGTGGAAGAAAGTTTAACAAAAGCGGCTCTCTGGGATGAGGTG    528
                     |||..||.|||||||||||.||.||.|||||.||.||.||||||||.|||
BL03714___pst    434 ATGAGATCGTGGAAGAAAGCTTGACGAAAGCCGCGCTGTGGGATGAAGTG    483

BSNT_03727___    529 AAGGATCGTTTACATTCATCCGCACTCTCGTTATCCGGCGGCCAGCAGCA    578
                     ||.||..|..|.|||...||.||.||.|||.|.||.|||||.||||||||
BL03714___pst    484 AAAGACAGGCTGCATGAGTCGGCTCTTTCGCTGTCAGGCGGGCAGCAGCA    533

BSNT_03727___    579 GCGTTTATGCATCGCGAGAACGCTTGCGATGAAGCCGGCTGTTCTTCTGC    628
                     ||||.|.||||||||..|.|||||.|||||||||||.|..||.||.|| |
BL03714___pst    534 GCGTCTCTGCATCGCCCGGACGCTCGCGATGAAGCCCGAAGTCCTGCT-C    582

BSNT_03727___    629 TT-GATGAACCAGCTTCAGCGCTTGATCCGATTTCAAATGCGAAAATAGA    677
                     || |||||.||.|||||||||||.||.|||||||||||.|||||||||||
BL03714___pst    583 TTGGATGAGCCTGCTTCAGCGCTCGACCCGATTTCAAACGCGAAAATAGA    632

BSNT_03727___    678 GGAATTAATTACAGGATTGAAAAGA-GAATACTCAATTATTATTGTCACG    726
                     |||||||||....|| ||.|||||| ||||||||.||.||.|||||||||
BL03714___pst    633 GGAATTAATCGTCGG-TTTAAAAGAGGAATACTCGATCATCATTGTCACG    681

BSNT_03727___    727 CACAATATGCAGCAGGCTCTGCGGGTTTCTGACCGGACGGCATTCTTTTT    776
                     ||.||.||||||||.|||....|..||||.||.|..|||||.||.||..|
BL03714___pst    682 CATAACATGCAGCAAGCTTCAAGAATTTCCGATCAAACGGCGTTTTTCCT    731

BSNT_03727___    777 AAACGGCGAGCTTGTAGAATACGGACAGACCGAACAGATTTTCACGAGTC    826
                     .|||||.||..|..|.|||||||..|..||.|||.|||||||.|.||.||
BL03714___pst    732 TAACGGAGATTTAATCGAATACGATCGTACGGAAAAGATTTTTATGAATC    781

BSNT_03727___    827 C----GAAAAAGCAAAAGACAGAGGATTATATTAATGGGAAATTCGGATA    872
                     |    ||||    ||||||||||||||||.||.||.||.|.|||.|||||
BL03714___pst    782 CTTCAGAAA----AAAAGACAGAGGATTACATCAACGGCAGATTTGGATA    827

BSNT_03727___    873 G    873
                     .
BL03714___pst    828 A    828


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