Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03718 and BL03718

See Amino acid alignment / Visit BSNT_03718 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_03718___yqgN.1.5803.seq
#    -bsequence dna-align/BL03718___yqgN.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03718___yqgN-BL03718___yqgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03718___yqgN-BL03718___yqgN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03718___yqgN
# 2: BL03718___yqgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity:     358/638 (56.1%)
# Similarity:   358/638 (56.1%)
# Gaps:         139/638 (21.8%)
# Score: 814.5
# 
#
#=======================================

BSNT_03718___      1 ATGAA---ATCACAATTAAGA---------AAAAAGACGCTGGAGGCACT     38
                     .||||   .||   .|||.||         |.|||||.|||||     ||
BL03718___yqg      1 GTGAAGCGTTC---TTTACGAAGCGAGGTCAGAAAGAGGCTGG-----CT     42

BSNT_03718___     39 ATC-TGC------------TTTATCAAA----TGAAGATATTCTTCAAAA     71
                     |.| |||            ||.|.|.||    .||||..||||       
BL03718___yqg     43 AACATGCCGGAACAGGAGTTTCACCTAAAGGCGGAAGCGATTC-------     85

BSNT_03718___     72 AACGGAACGTATGT---ATAAGTACTTGTTTTCTCTGCCGGAGTGGCAAA    118
                     |.||||| |..|.|   ||.|..||                |||||.|||
BL03718___yqg     86 ACCGGAA-GCTTTTCCAATCAAAAC----------------AGTGGAAAA    118

BSNT_03718___    119 ATGC--CGGCACCATTGCCGTCACTATTTCCAGAGGATTAGAGA--TACC    164
                     |.||  |.|  ..||||||.|.||..|.||||||  |.|.|.||  ||||
BL03718___yqg    119 AAGCGTCTG--TTATTGCCCTTACGGTATCCAGA--AATCGCGAAGTACC    164

BSNT_03718___    165 GACGCGTCCTGTCATTGAGCAGGCTTGGGAAGAAGGGAAACAAGTTTGCA    214
                     |||....||..|.||.||.|||||..||...|||||.|||...||.||||
BL03718___yqg    165 GACAAAACCGATTATCGAACAGGCCCGGCTTGAAGGAAAAACGGTGTGCA    214

BSNT_03718___    215 TCCCAAAATGCCAT-CCGGACACGAAGAAAATGCAATTTCGCACATATCA    263
                     |.||.||||| .|| ||.||.||.||.||.|||||.|||||||..|||||
BL03718___yqg    215 TTCCGAAATG-TATGCCTGAAACAAAAAAGATGCACTTTCGCAGCTATCA    263

BSNT_03718___    264 GACTGATGATCAG----CTCGAAACCGTGTATGCCGGACTGCTCGAGCCG    309
                     |   ||||| .||    ||.|||..|||||||...||.||||..||.|||
BL03718___yqg    264 G---GATGA-AAGCGATCTTGAAGTCGTGTATTTTGGCCTGCAGGAACCG    309

BSNT_03718___    310 GTAATTGAAAAAACAAAA-------GAAGTAAACCCATCACAAATTGACT    352
                     .|..|     |.||||||       ||.|.||.||.|  |.|.||.||||
BL03718___yqg    310 ATCGT-----ACACAAAACCGAGCGGATGGAACCCGA--AGACATCGACT    352

BSNT_03718___    353 TGATGATCGTTCCAGGTGTTTGTTTTGATGTTAACGGGTTTAGGGTCGGC    402
                     |.||..|.||.||.||..||||.|.|||....|..||.|..||..|||||
BL03718___yqg    353 TCATCCTTGTGCCGGGAATTTGCTATGACCGGAGAGGATACAGAATCGGC    402

BSNT_03718___    403 TTTGGAGGCGGCTATTATGATCGCTA----------TTTAAGTGAATATG    442
                     |.||||||||||||||||||..|.||          ||||         .
BL03718___yqg    403 TATGGAGGCGGCTATTATGACAGATACCTGGCCGGCTTTA---------C    443

BSNT_03718___    443 AAGGGAAGACA----GTCTCATTGCTTTTGGAGTGCCAGTTGTATGCG--    486
                     ||   ||||.|    |||.| |||| .||.||||||||..|| || ||  
BL03718___yqg    444 AA---AAGATACCGCGTCGC-TTGC-CTTCGAGTGCCAAGTG-AT-CGGT    486

BSNT_03718___    487 CACGTACCCAGTCTGCCGCATGACATCCCGGTACATAAGCTTGTAACAGA    536
                     ||.||.||.|.|..||||||.|||||||||||..|..||.||.|.||.||
BL03718___yqg    487 CATGTTCCAAATGAGCCGCACGACATCCCGGTCAAGCAGGTTTTGACCGA    536

BSNT_03718___    537 GGATCG--GATTA----TTTCTTG----TTTTTCATAA    564
                     .|| ||  |.|||    |..||.|    |..|..||||
BL03718___yqg    537 AGA-CGCCGTTTACAACTGCCTCGACACTGCTGAATAA    573


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