Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03738 and BL03726

See Amino acid alignment / Visit BSNT_03738 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:46
# Commandline: needle
#    -asequence dna-align/BSNT_03738___yqfZ.1.5803.seq
#    -bsequence dna-align/BL03726___yqfZ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03738___yqfZ-BL03726___yqfZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03738___yqfZ-BL03726___yqfZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03738___yqfZ
# 2: BL03726___yqfZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     209/339 (61.7%)
# Similarity:   209/339 (61.7%)
# Gaps:          72/339 (21.2%)
# Score: 511.0
# 
#
#=======================================

BSNT_03738___      1 ATGAAGCGTCTCACCTTAGTATGCAGCATTGTTTTTATAC--TTTT----     44
                     |||||.|||.||     |.|.|||     ||||||    |  ||||    
BL03726___yqf      1 ATGAAACGTGTC-----ATTGTGC-----TGTTTT----CGATTTTGCTC     36

BSNT_03738___     45 ----TATTC-TTGT---TTATGACCTTAAAAT-TGGAACCATCCCCATTC     85
                         |.||| ||||   |||||| |||.|||| .||.||||||||   ||
BL03726___yqf     37 GCCCTGTTCATTGTTTATTATGA-CTTGAAATCAGGCACCATCCC---TC     82

BSNT_03738___     86 AGGA--CCTCCCTGTCTATGAAGCAT--CAGCAAAA---ACGGCTGTACA    128
                     |..|  |||..|.|.|| |.||.|||  ||||..||   .||||||  ||
BL03726___yqf     83 AAAACGCCTTACCGGCT-TCAACCATGGCAGCGGAAGCTCCGGCTG--CA    129

BSNT_03738___    129 AGAACCGGC-TTATAAAACGGTGAAGGTAAAGCCGGGTGATACGGTTATG    177
                     ||  ||.|| .|||||..|.||.|.|||||||||.||..|.|||||..|.
BL03726___yqf    130 AG--CCTGCAATATAAGTCCGTTACGGTAAAGCCCGGACAAACGGTATTT    177

BSNT_03738___    178 TCGATAGTC-GGATCAGCAG--GTTCTCCGGATGACATTGTAA-------    217
                     ||.||..|| |||.|||| |  ||  |||||.|||||    ||       
BL03726___yqf    178 TCAATCATCGGGAACAGC-GCCGT--TCCGGCTGACA----AAATAGCCG    220

BSNT_03738___    218 AGGATTTTGAAGCACTGAATCCAAATGTGAAAGCCAATGC--CATTCAAG    265
                     |.||||||||||...|||||||.|||||..|.||  ..||  ||||||||
BL03726___yqf    221 AAGATTTTGAAGAGTTGAATCCGAATGTTGAGGC--GGGCCGCATTCAAG    268

BSNT_03738___    266 C-GGGAACAGCGTATAAATTCCCGGTCTACCC---TTAA    300
                     | ||...|| |.||.||.||.||.||.||.||   ||||
BL03726___yqf    269 CAGGTGTCA-CCTACAAGTTTCCCGTTTATCCTGATTAA    306


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