Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02179 and BL03742
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_02179___htrA.1.5803.seq
# -bsequence dna-align/BL03742___htrA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02179___htrA-BL03742___htrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02179___htrA-BL03742___htrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02179___htrA
# 2: BL03742___htrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1448
# Identity: 915/1448 (63.2%)
# Similarity: 915/1448 (63.2%)
# Gaps: 244/1448 (16.9%)
# Score: 2785.5
#
#
#=======================================
BSNT_02179___ 1 ATGATGGATAACTATCGTGATGAAAACAGAACGAAAGGTAATGAGAATGA 50
|||| |.||| ||.|.|||| .||.||..|||
BL03742___htr 1 ---ATGG---AATAT-------AATAGAGAA--------GATCAGCTTGA 29
BSNT_02179___ 51 GGTCTTTTTAACGAAAGAGAACGATCAGAGCGCCTCCTACTC---GGCCC 97
|||.||| |||||.|..|.||.||||.| || .||||
BL03742___htr 30 ---------AACAAAA---AACGAACTCATCGTCTCCGA-TCAAAAGCCC 66
BSNT_02179___ 98 GCAATGTCATTCATGATCAGGAGA---------------AGAAAAAACGA 132
||.||||.|| ||.||||.||.
BL03742___htr 67 --------------GACCAGGCGATAAAAAAAGCAGAACAGCAAAAGCGG 102
BSNT_02179___ 133 GGATTC----GGATGGTTCAGACCGTTGCTTGGCGGAGTGATCGGCGGCA 178
.||.|| ||||| |..|||.|.||..||||..|.|||||.||.|
BL03742___htr 103 AGACTCTCGTGGATG----ACGCCGATTCTCAGCGGCATCATCGGAGGAA 148
BSNT_02179___ 179 GTCTCGCCCTTGGCATTTACACGTTTACA---CCGCTTGGC---GACCAT 222
|.||||..||.|||.| |||| ||| |.||.|.|| |||
BL03742___htr 149 GCCTCGTTCTCGGCGT---CACG---ACATACCAGCATAGCAAAGAC--- 189
BSNT_02179___ 223 GATTCTCAGGACACTGCAAAACAAT-CATCCAGCCAGCAGCAAACGCAAT 271
||.||.|| |||| |||||..|||| ||||||
BL03742___htr 190 ---------GAAACGGC----CAATACATCCGTCCAG------ACGCAA- 219
BSNT_02179___ 272 CTGTTACAGCAACAAG----------CA-------CCTCCTCT-----GA 299
||| |||.|| || |.|||.|| ||
BL03742___htr 220 -----ACA--AACGAGACGTCGAACTCATCGGCTTCTTCCACTAAAGCGA 262
BSNT_02179___ 300 AT--CTAAAAAAAGCTCAAGCAGC---TCATCTG-CATTCAAGAGCGAGG 343
|| |.|||||..| ||.||||.| ||.||.| |||
BL03742___htr 263 ATACCGAAAAATTG-TCCAGCACCAATTCGTCCGACAT------------ 299
BSNT_02179___ 344 ACTCTTCTAAAATCTCAGATATGGTAGAAGACCTTTCACCAGCGATTGTC 393
|||||.| |||||.|||.|..|.||.||.||.||.|||
BL03742___htr 300 ----TTCTACA---------ATGGTTGAAAATGTATCTCCCGCCATCGTC 336
BSNT_02179___ 394 GGTATTACAAATCT-TCAGGCACAATCAAACAGCTCTTTGTTCGGCTCTA 442
||||||.|||| || |||...||||.||.|.|||..|.|||||||
BL03742___htr 337 GGTATTTCAAA-CTATCAAAAACAAACAGAGAGCGGTATGTTCGG----- 380
BSNT_02179___ 443 GTTCTTCTGA---------------TTCCAGCGAAGATACAGAAAGCGGT 477
||.||| .||.||||||.| |||||..||.
BL03742___htr 381 ----TTTTGAAAGCAACAGCAGCAGCTCAAGCGAACA---AGAAACAGGC 423
BSNT_02179___ 478 TCAGGGTCAGGTGTCATTTTCAAAAAAGAGAATGGCAAGGCTTATATCAT 527
.||||.|||||||||||.|..|||||||..||.|||||.||.||.||.||
BL03742___htr 424 ACAGGCTCAGGTGTCATCTATAAAAAAGCAAACGGCAAAGCATACATTAT 473
BSNT_02179___ 528 TACAAATAACCACGTCGTAGAAGGGGCATCATCACTGAAGGTATCTTTAT 577
|||||||||||||||.||.|||||.||.||...|||||.|||.||..|.|
BL03742___htr 474 TACAAATAACCACGTTGTCGAAGGCGCGTCTAAACTGACGGTTTCCCTGT 523
BSNT_02179___ 578 ATGACGGCACTGAGGT-TACTGCAAA--GCTGGTAGGCAGTGACTCGTTA 624
...||||||..||.|| .|..|.||| |||| |||||.||.|||||.
BL03742___htr 524 CCAACGGCAAAGAAGTGGAAGGTAAATTGCTG---GGCAGCGATTCGTTG 570
BSNT_02179___ 625 ACTGATTTAGCCGTCCTCCAAATCAGTGATGACCACGTCACAAAAGTGGC 674
||.||..|.|||||..|..||||....|.|||.|||||...||||||.||
BL03742___htr 571 ACAGACCTTGCCGTTGTTGAAATTTCCGCTGATCACGTGGAAAAAGTCGC 620
BSNT_02179___ 675 AAACTTCGGTGATTCATCTGATCTTAGAA--CAGGCGAGACCGTTATTGC 722
....|||||.|||||.|| .|.||| ||| |||||||..|.||.||.||
BL03742___htr 621 CTCTTTCGGCGATTCGTC-AAGCTT-GAAAGCAGGCGAATCGGTGATCGC 668
BSNT_02179___ 723 GATTGGGGATCCGCTTGGAAAAGACCTGTCCCGCACAGTAACACAAGGAA 772
.|||||..|.|||||.||.|||||.|||||||||||.||.||||||||.|
BL03742___htr 669 TATTGGAAACCCGCTCGGCAAAGATCTGTCCCGCACGGTGACACAAGGCA 718
BSNT_02179___ 773 TTGTAAGCGGCGTGGACAGAACGGTTTCAATGTCTACATCAGCCGGCGAA 822
|..|.|||||.||.||..|.||.|||||..|...||||||.||.|||.||
BL03742___htr 719 TCATCAGCGGTGTTGATCGGACCGTTTCCGTAGATACATCCGCAGGCCAA 768
BSNT_02179___ 823 A-CGAGCATTAACGTCATTCAGACAGACGCAGCAATTAATCCAGGTAACA 871
| |||| ||.|||||||||||.||.|||||.||.||.||.||.||.||||
BL03742___htr 769 ACCGAG-ATGAACGTCATTCAAACCGACGCGGCCATCAACCCCGGCAACA 817
BSNT_02179___ 872 GCGGCG--GTCCTTTGTTAAATACAGACGGCAAAATTGTCGGCATTAACA 919
||||.| |.|||| ||.||||||.|.||..||.|..|||||||.||||
BL03742___htr 818 GCGGAGGCGCCCTT--TTGAATACAAAGGGTGAAGTGATCGGCATCAACA 865
BSNT_02179___ 920 GTATGAAAATCAGTGA----GGATGATGTTGAGGGCATCGGATTTGCCAT 965
|.|||||||||||||| ||| ||.||.||||||||||||||.||
BL03742___htr 866 GCATGAAAATCAGTGAAAGCGGA----GTAGAAGGCATCGGATTTGCGAT 911
BSNT_02179___ 966 TCCAAGCAATGACGTAAAACCGATTGCTGAAGAACTGCTGTCTAAAGGCC 1015
||||||||||||.||.|||||||||||.|||||.|||.||||||||||..
BL03742___htr 912 TCCAAGCAATGATGTCAAACCGATTGCAGAAGAGCTGATGTCTAAAGGAA 961
BSNT_02179___ 1016 AAATTGAACGTCCATATATCGGTGTCAGCATGCTTGATCTGGAACAAGTG 1065
|||||||.||.||.|..|||||..||.|||||.|.|||||.||.||.|||
BL03742___htr 962 AAATTGAGCGCCCGTTCATCGGAATCGGCATGATGGATCTTGAGCAGGTG 1011
BSNT_02179___ 1066 CCGCAAAATTACCAAGAAGGCACACTCGGCCTGTTCGGCAGCCAGCTGAA 1115
|||.||||.||.|||..||||||.|||||..|...||||||||||.|.||
BL03742___htr 1012 CCGGAAAACTATCAAACAGGCACCCTCGGATTAAGCGGCAGCCAGTTAAA 1061
BSNT_02179___ 1116 TAAAGGTGTTTACATCCGTGAGGTCGCTTCAGGCTCTCCTGCTGAAAAGG 1165
.|||||.||.||||||||..||||||||||||||||.||.||||||||.|
BL03742___htr 1062 CAAAGGCGTCTACATCCGCCAGGTCGCTTCAGGCTCCCCAGCTGAAAAAG 1111
BSNT_02179___ 1166 CCGGATTAAAAGCGGAGGATATTATCATCGGCCTAAAAGGTAAAGAAATT 1215
|.||..|.||||.|.|.|||.|.|||.||.||.|.||.||.|||||||..
BL03742___htr 1112 CGGGCCTTAAAGAGAACGATGTCATCGTCAGCTTTAACGGAAAAGAAACC 1161
BSNT_02179___ 1216 GATACAGGCAGTGAATTGCGCAA--TATCTTATATAAAGACGCAAAGATC 1263
||||||||.||.|...||||||| | |||| ||.||.||.|||||.|||
BL03742___htr 1162 GATACAGGAAGCGCGCTGCGCAACCT-TCTT-TACAACGATGCAAAAATC 1209
BSNT_02179___ 1264 GGTGAAACCGTTGAAGTGAAAA--TT---CTC---CGAAACGGCAAAGAA 1305
||.||.||.|| ||| || ||| ||||||||||||...
BL03742___htr 1210 GGGGATACGGT--------AAAGGTTACCCTCATTCGAAACGGCAAAACC 1251
BSNT_02179___ 1306 ATGACGAAAAAAATTAAACTTGATCAAAAAGAAGAGAAAACTTCGTAA 1353
|||||.|||.||||.|..|||||.||.||||||.....|.|.||.|||
BL03742___htr 1252 ATGACAAAACAAATCACCCTTGACCAGAAAGAATCCGCATCATCTTAA 1299
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