Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02199 and BL03756

See Amino acid alignment / Visit BSNT_02199 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_02199___ykkA.1.5803.seq
#    -bsequence dna-align/BL03756___ykkA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02199___ykkA-BL03756___ykkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02199___ykkA-BL03756___ykkA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02199___ykkA
# 2: BL03756___ykkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 615
# Identity:     342/615 (55.6%)
# Similarity:   342/615 (55.6%)
# Gaps:         180/615 (29.3%)
# Score: 921.5
# 
#
#=======================================

BSNT_02199___      1 ---------ATGAAGGACTTA--TCCATAAGAAACGACATGGCGCCAACG     39
                              .||||.||.|||  ||||.|.|||  ||.||||||||.||.
BL03756___ykk      1 ATGCCGTTTTTGAAAGATTTATCTCCAGATGAA--GAGATGGCGCCGACA     48

BSNT_02199___     40 GTCAGTCTGCTGTATTCCGCAGTGGAAGAAAACAGTCTC---CGTCTGGC     86
                     |||.|.|||||.|.|||.||.||..|.|||||||   ||   ||.|||..
BL03756___ykk     49 GTCGGGCTGCTTTTTTCGGCGGTCAATGAAAACA---TCGAACGGCTGAA     95

BSNT_02199___     87 TTCTATCG---------TAAGCCATATGACACACAGTGAA---CTTTACT    124
                     .||.||||         |.||||            |.|||   ||..|.|
BL03756___ykk     96 ATCAATCGTCTCCGGCATCAGCC------------GGGAAGAGCTGGAAT    133

BSNT_02199___    125 ATAAGGG-GCGC-TGCCAAACAAAAAACAGCACGGCTCAGCTTTTGCACC    172
                     ||||||| |.|| ||.|.|  .||||||||||..||.|||||..|..|.|
BL03756___ykk    134 ATAAGGGTGAGCATGGCGA--CAAAAACAGCATCGCCCAGCTGATCTATC    181

BSNT_02199___    173 ATATCACAAATGTTGATATCAGATGGGT---CTGGCGTATCAAGGAAAAT    219
                     ||.|.|..|||||.|||.||.|.|||||   |.|||   |.||||||   
BL03756___ykk    182 ATTTAATCAATGTCGATGTCCGCTGGGTTTACAGGC---TGAAGGAA---    225

BSNT_02199___    220 CGGATACCGAACCATATT------------GAACAGACATACGGCCCGAT    257
                          |.||||    |||            |||.|||.||||||.|||||
BL03756___ykk    226 -----AGCGAA----ATTCCAAGAGAGCTGGAAGAGAAATACGGACCGAT    266

BSNT_02199___    258 GACAGATGAAAGCGGACGGCTGCCTGTACCGGTGAATCAG----CCAGAC    303
                     |||.|||||||.||||||..||||.|   .|||||  |||    ||   |
BL03756___ykk    267 GACGGATGAAAACGGACGTTTGCCGG---AGGTGA--CAGGCGTCC---C    308

BSNT_02199___    304 TTAGATGAACTCC-TGAAAAGACATC----AGCATGTAGTAGAGGAGCTG    348
                     ||.||      || ||..|    |||    .||||   |.|||||.||||
BL03756___ykk    309 TTTGA------CCGTGTTA----ATCGAGTGGCAT---GAAGAGGTGCTG    345

BSNT_02199___    349 AAATCGGTATGCTTCACTTTAACAGA-----AAATGCTTT---GAACCAG    390
                          |..||| ||.|    ||||.|     |||.|||||   |||..||
BL03756___ykk    346 -----GAGATG-TTGA----AACACACCGCTAAAGGCTTTTCGGAAAAAG    385

BSNT_02199___    391 CCGCTTTCCT-TCGAAGGTGACACCG----------------CGACGATA    423
                     .|   ||.|| ..||||||   .|||                |||||||.
BL03756___ykk    386 AC---TTGCTGAAGAAGGT---TCCGTATGAGGGAGGGTTTTCGACGATC    429

BSNT_02199___    424 CGATGGGGAATTTGGCATATGGCAGATCATAACCGCTATCATCAGGCACA    473
                     ||.|||||.||.|||||||||.|.|||||||||||||||||.|||||.||
BL03756___ykk    430 CGCTGGGGGATCTGGCATATGTCTGATCATAACCGCTATCACCAGGCGCA    479

BSNT_02199___    474 TATTGAAGCTCTCAAAAAAGA-------ATG-GAAGCAG--GATGTGGCG    513
                     ||||.|.|||..|..||||||       ||| .||.|||  ||       
BL03756___ykk    480 TATTCAGGCTTGCTTAAAAGAGTTCCGCATGCAAAACAGTTGA-------    522

BSNT_02199___    514 AAGTATGAACGCTAA    528
                                    
BL03756___ykk    522 ---------------    522


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