Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02184 and BL03769
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:41
# Commandline: needle
# -asequence dna-align/BSNT_02184___dppD.1.5803.seq
# -bsequence dna-align/BL03769___dppD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02184___dppD-BL03769___dppD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02184___dppD-BL03769___dppD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02184___dppD
# 2: BL03769___dppD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1063
# Identity: 731/1063 (68.8%)
# Similarity: 731/1063 (68.8%)
# Gaps: 119/1063 (11.2%)
# Score: 2462.5
#
#
#=======================================
BSNT_02184___ 1 AT----GGAAAAAGTTCTGTCAGTCCAAAATCTGCACGTGTCTTTTACGA 46
| |.|||||||..||..||||.|.|||.||||.||.||.|||||||
BL03769___dpp 1 -TTGCGGAAAAAAGTATTGGAAGTCGAGAATTTGCATGTTTCATTTACGA 49
BSNT_02184___ 47 CTTACGGCGGGACGGTTCAGGCGGTCAGAGGGGTGAGCTTTGATTTGTAT 96
|.||||||||.|||||..|.||.|||.|.||.|||||||||||.||.|||
BL03769___dpp 50 CATACGGCGGAACGGTCAAAGCCGTCCGCGGCGTGAGCTTTGAGTTATAT 99
BSNT_02184___ 97 CAAGGAGAAACCTTTGCGATCGTCGGCGAATCCGGCTGCGGCAAAAGCGT 146
.|.||.||.||.||||||||.||||||||.||.||.|||||.||||||||
BL03769___dpp 100 GAGGGGGAGACGTTTGCGATTGTCGGCGAGTCGGGATGCGGAAAAAGCGT 149
BSNT_02184___ 147 GACCTCCCAAAGCATCATGGGCCTGCTTCCGCC----TTATTCGGCGAAG 192
|||.||.|||||||||||| |.||||..||| || ||||||.|.|
BL03769___dpp 150 GACATCGCAAAGCATCATG---CGGCTTTTGCCGAAGTT-TTCGGCAACG 195
BSNT_02184___ 193 GTGACAGACGGCAGC-ATTCTATTTAA---AAACATAGACCTTTGCCGTC 238
||.|||||||| .|| ||.|..||||| ||| ||||.|..|||..|
BL03769___dpp 196 GTCACAGACGG-TGCGATCCGCTTTAAGGGAAA---AGACTTGCGCCACC 241
BSNT_02184___ 239 TCTCTGACAAAGAAATGAGAGGTATAAGGGGAGCCGACATTTCTATGATT 288
|.||.||.|||||.||||||...||.||.||||||||.||.||.|||||.
BL03769___dpp 242 TGTCCGAAAAAGAGATGAGAAAGATCAGAGGAGCCGAAATCTCAATGATC 291
BSNT_02184___ 289 TTTCAAGACCCGATGACGGCGTTAAACCCTACGCTGACTGTCGGCGACCA 338
||.||.||.|||||||||||..|.||.||.||..||||.|||||.|||||
BL03769___dpp 292 TTCCAGGATCCGATGACGGCCCTGAATCCGACCTTGACCGTCGGAGACCA 341
BSNT_02184___ 339 GCTGGGGGAAGCGCTATTGCGCCACAAAAAAATGAGC--------AAAAA 380
|||||..||||||||.||| .||.||..|| ||||.
BL03769___dpp 342 GCTGGCAGAAGCGCTGTTG--------GAACATCGGCCCGTGTCTAAAAC 383
BSNT_02184___ 381 AGCGGCACGGAAAGAGGTGCTTTCCATGCTGTCATTG-----GTTGGTAT 425
||..||.||.||||..||..||||.|||| ||| ||.||.||
BL03769___dpp 384 AGACGCTCGAAAAGCAGTCATTTCGATGC-----TTGAGCTCGTCGGGAT 428
BSNT_02184___ 426 TCCAGATCCCGAAGAGCGCCTAAAGCAATATCCCCACCAATTCAGCGGCG 475
.||..||||..|||||||..|.|.|||.|||||.||||||||||||||.|
BL03769___dpp 429 CCCGAATCCGAAAGAGCGTTTGAGGCAGTATCCGCACCAATTCAGCGGAG 478
BSNT_02184___ 476 GCATGAGACAGCGGATTGTCATTGCGATGGCGCTGATTTGCGAGCCTGAC 525
|.|||||.||||||||.||.||.||.||||||||.||.|||||.||.||.
BL03769___dpp 479 GGATGAGGCAGCGGATCGTAATCGCCATGGCGCTCATCTGCGAACCGGAG 528
BSNT_02184___ 526 ATCTTAATTGCGGATGAACCGACCACCGCCCTGGATGTAACCATTCAGGC 575
||.||.|||||||||||||||||.|||||.||.|||||.|||||||||||
BL03769___dpp 529 ATTTTGATTGCGGATGAACCGACGACCGCGCTTGATGTCACCATTCAGGC 578
BSNT_02184___ 576 ACAGATTTTAGAGCTGTTTAAAGAGATTCAGAGAAAAACGAATGTGTCTG 625
.||.|||.|.|||||.||||||||.||||||.|.|||||....||.||..
BL03769___dpp 579 GCAAATTCTTGAGCTTTTTAAAGACATTCAGCGGAAAACCGGGGTATCCA 628
BSNT_02184___ 626 TCATTCTGATTACGCACGATTTAGGGGTTGTTGCCCAGGTAGCTGACAGA 675
|||||.|.||.||.||.|||||.||.||.||.||.|||...||.||||||
BL03769___dpp 629 TCATTTTAATCACCCATGATTTGGGCGTAGTCGCACAGACGGCAGACAGA 678
BSNT_02184___ 676 GTCGCAGTCATGTATACCGGGAAAATGGCGGAAATCGGCA-CAAGAAAAG 724
.||||.||.|||||..|.||||||||.||.|||| |||.| |.||.|..|
BL03769___dpp 679 ATCGCCGTGATGTACGCAGGGAAAATAGCTGAAA-CGGGAGCGAGGAGGG 727
BSNT_02184___ 725 ATATTTTTTATCAGCCGCAGCACCCATATACAAAAGGCCTGCTGGGCTCT 774
||||||||||.|..|||||||||||.||||||||||||.|||||..|||.
BL03769___dpp 728 ATATTTTTTACCGTCCGCAGCACCCGTATACAAAAGGCTTGCTGCACTCC 777
BSNT_02184___ 775 GTCCCGCGGCTGGA---TTTAGATGGCGCTGAGCTGACC-----CCGATT 816
||.|||.||||.|| |..|||| ||.|||| ||||||
BL03769___dpp 778 GTTCCGAGGCTTGACCTTGAAGAT--------GCAGACCTCGTTCCGATT 819
BSNT_02184___ 817 GACGGAACGCCGCCGGATTTATTTTCGCCTCCGCC---GGGCTGCCCGTT 863
||||||||.|||||||||||.|||| ||||||| .||.||.|||||
BL03769___dpp 820 GACGGAACACCGCCGGATTTGTTTT---CTCCGCCTGAAGGATGTCCGTT 866
BSNT_02184___ 864 TGCCGCCCGCTGT--CCGAACAGGATGGTTGTGTGTGACAGGGTGTACCC 911
|.|.||.|||||| |||..|| ||||..|||||.|.||...|
BL03769___dpp 867 TACGGCGCGCTGTTCCCGCGCA--ATGGAAGTGTGCGGCAAAAT------ 908
BSNT_02184___ 912 GGGCCA----GACGAT-CAGATCTGACTCG------CACACCGTCAA--- 947
||| |.||.| |||| .|.|||| || ||.|
BL03769___dpp 909 ---CCATCCTGCCGTTACAGA--AGTCTCGGCGGGTCA-----TCGAGTG 948
BSNT_02184___ 948 --CTGCTGGCTGCAGGATCAACGAGCAGAGCATGCGGTGCTGTCAGGAGA 995
|||||||||.||||||.||.|.|||.|....||..|||||.|| |.|
BL03769___dpp 949 TGCTGCTGGCTTCAGGATGAAAGGGCAAAAAGGGCTCTGCTGACA--ACA 996
BSNT_02184___ 996 TGCGAAGGATTGA 1008
| ||
BL03769___dpp 997 T---AA------- 999
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