Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01195 and BL03788

See Amino acid alignment / Visit BSNT_01195 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:43
# Commandline: needle
#    -asequence dna-align/BSNT_01195___yesU.1.5803.seq
#    -bsequence dna-align/BL03788___yesU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01195___yesU-BL03788___yesU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01195___yesU-BL03788___yesU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01195___yesU
# 2: BL03788___yesU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity:     455/744 (61.2%)
# Similarity:   455/744 (61.2%)
# Gaps:         132/744 (17.7%)
# Score: 1293.0
# 
#
#=======================================

BSNT_01195___      1 -------------ATG---TATAAGGAAGGCGCGTGCCTG---TACCACA     31
                                  |||   .|.||||||       |||||   ||.||.|
BL03788___yes      1 GTGCCGGAGTGTAATGGAAGAGAAGGAA-------GCCTGATTTATCAAA     43

BSNT_01195___     32 -------ATCCGCTCCGGTCAGTTAGTGATGTAAAG--------GACTGG     66
                            |||..||||               |.|||        |.||||
BL03788___yes     44 ACCCTTTATCTTCTCC---------------TGAAGATCTCCGCGGCTGG     78

BSNT_01195___     67 CGGATGGAGGGAGGCGGACAG--ATC--TCATTTGACGATCA------CA    106
                     ..||||||.|     |||.||  |||  ||.|||     |||      |.
BL03788___yes     79 GTGATGGAAG-----GGAAAGGAATCGTTCGTTT-----TCAGAACGGCC    118

BSNT_01195___    107 GCTTGC-------------ACCTGTCACATGTCCA------GGACGAAGC    137
                     ||.|||             ||.||.|.| ||..||      ||||||.||
BL03788___yes    119 GCCTGCATATGGAGAACGAACTTGACGC-TGAGCAATATGGGGACGATGC    167

BSNT_01195___    138 GCACTTTGTCTTTTGGTGTCCGGAAACCTTTCCAGACGGCATCATTGTGA    187
                     .||.|||||.|..|||||.||.||.||.||.||.||.||.||..||||||
BL03788___yes    168 TCATTTTGTTTACTGGTGCCCTGAGACATTCCCTGATGGAATTGTTGTGA    217

BSNT_01195___    188 CATGGGACTTCT-CTCCGATCGAGCAGCCTGGACTGTGTATGCTGTTTTT    236
                     ..|||||.|||| |.|.|..|| |.|||||||..|.||.|||.|.|||||
BL03788___yes    218 AGTGGGATTTCTACCCTGTGCG-GGAGCCTGGCTTATGCATGATATTTTT    266

BSNT_01195___    237 TGCCGCTGCGGGTATTCGCGGCGAGGATTTGTTTGACACAAGTCTCAGGA    286
                     |||.||.||.||.||....|||||.|||||.||||||....|.||...|.
BL03788___yes    267 TGCAGCCGCCGGCATGAATGGCGAAGATTTATTTGACGGGCGGCTGGCGG    316

BSNT_01195___    287 AAAGAACAGGAACATACCCTGAGTATCATTCAGGAGATATCAATGCCCTC    336
                     |.||.||.||.|.|||.||..|.||||||||.||.||.|||||..|..|.
BL03788___yes    317 AGAGGACGGGGAAATATCCGCAATATCATTCCGGGGACATCAACACATTG    366

BSNT_01195___    337 CACCTGTCGTATTTCCGCAGA---AAATACCCGGAGGAAAGAGCATTCCG    383
                     ||||||||||||||   ||||   ||..|..|.||.||||||||||||||
BL03788___yes    367 CACCTGTCGTATTT---CAGACATAAGCATGCTGATGAAAGAGCATTCCG    413

BSNT_01195___    384 CACCTGCAATTTAAGAAAAAGCCGCGGTTTCCACCTCGCC---GAAATGG    430
                     .||.|||||..|.||.|||||||||||.||.|||||||.|   |||   |
BL03788___yes    414 AACATGCAACCTCAGGAAAAGCCGCGGCTTTCACCTCGTCTGTGAA---G    460

BSNT_01195___    431 GGGCCGATCCGCT---GCCTTCTCCAGACGACGCTGATT--CTCCGTATC    475
                     |.||.||||||||   |||..||.||   ||||||  ||  ||||.||.|
BL03788___yes    461 GAGCTGATCCGCTTCCGCCCGCTGCA---GACGCT--TTGCCTCCCTACC    505

BSNT_01195___    476 GTATGAAGCTGATCAAAGACAAAGGC-TATGTGCACTTTTCAATCAATGG    524
                     |.||||||||.||.||.||| ..||| ||.||.|..|||||||||||.|.
BL03788___yes    506 GGATGAAGCTCATAAAGGAC-GGGGCATACGTTCGTTTTTCAATCAACGA    554

BSNT_01195___    525 TCTGCCCATTCTTGAGTGGATGGACGACGGCAGCACTTATGGGCCTGTGT    574
                     .|||||||||.|.||.||||.|||.||||||||...||..||.||||| |
BL03788___yes    555 GCTGCCCATTTTGGAATGGACGGATGACGGCAGGCGTTTCGGCCCTGT-T    603

BSNT_01195___    575 TA----ACAAAAGGAAAAATCGGGTTCCGGCAGATGGCCCCCATGAAAGC    620
                     ||    .|   ||||||.|||||.|||.|.||.|||||.||..||.||||
BL03788___yes    604 TACGGCGC---AGGAAAGATCGGCTTCAGACAAATGGCTCCGCTGGAAGC    650

BSNT_01195___    621 AGCTTACAGGGATTTTGCCGTGCATCAAGC-GGTGAGAAGATGA    663
                     |||.|||....|.||||..|||| .||.|| |.||.|..|.|||
BL03788___yes    651 AGCCTACGCCAACTTTGAAGTGC-GCAGGCTGCTGCGCGGCTGA    693


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