Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01193 and BL03789
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:43
# Commandline: needle
# -asequence dna-align/BSNT_01193___yesT.1.5803.seq
# -bsequence dna-align/BL03789___yesT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01193___yesT-BL03789___yesT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01193___yesT-BL03789___yesT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01193___yesT
# 2: BL03789___yesT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 762
# Identity: 468/762 (61.4%)
# Similarity: 468/762 (61.4%)
# Gaps: 111/762 (14.6%)
# Score: 1302.5
#
#
#=======================================
BSNT_01193___ 1 ATG------------AAGAAACCGA---TTCAAGTATTTTTAGCGGGGGA 35
||| ||.||||||| |...|||||.|||.||.|||||
BL03789___yes 1 ATGAAACGAACAGACAAAAAACCGAAAGTGACAGTATATTTGGCCGGGGA 50
BSNT_01193___ 36 TTCCACTGTGAGTGACTGCCCGCCTCATGAAGCGCCGATGGCGGGGTGGG 85
.||.||.||....|||||.||.||.|||||||||||||||||.||.||||
BL03789___yes 51 CTCGACCGTCGCAGACTGTCCCCCGCATGAAGCGCCGATGGCCGGCTGGG 100
BSNT_01193___ 86 GGCAGGT-ATTCGGGCAATTGTTTTCTGA--AGGTGTGCTGGTCCGCAAT 132
|||||.| .||| .||..||.||.||.|| ||| .||| ||||...|||
BL03789___yes 101 GGCAGATGCTTC-CGCTGTTTTTCTCAGATGAGG-CTGC-GGTCGTGAAT 147
BSNT_01193___ 133 CAT-GCCAAAGGAGGAGCGAGCACCAA----TTCTTTTGTGGAGGAAGGA 177
|| ||.|||||.||.||.||..|.|| |||.|| ||.|||||.
BL03789___yes 148 -ATGGCAAAAGGCGGGGCCAGTTCGAACAGCTTCATT----GATGAAGGC 192
BSNT_01193___ 178 AGGCTTCAAGCAATTGCCGAGCACATCACACAAGGCGATTATTTGTTGAT 227
.||||..|.|..|||.|.||||...|..|.|..||.||||||.|||||||
BL03789___yes 193 CGGCTCGATGACATTACGGAGCGGCTTGCGCCTGGTGATTATGTGTTGAT 242
BSNT_01193___ 228 TCAATTCGGCCACAATGACCAAAAACCGCGGGGGACGAAGCCGTACTCCA 277
.||.|||||||||||.||.|||||||||...||.||..|.||.||..|.|
BL03789___yes 243 CCAGTTCGGCCACAACGATCAAAAACCGTACGGAACAGACCCTTATACAA 292
BSNT_01193___ 278 CATTTCAGCAGTTTCTTACCTTGTTTGCAGATACGGCACGCGAAAAGGGC 327
|.|.||||.||..||||..|...|.||..||..|||..||||||||....
BL03789___yes 293 CCTATCAGGAGCATCTTGTCCGCTATGTGGAAGCGGTTCGCGAAAAACAA 342
BSNT_01193___ 328 GCG-CATCCTGTGTTCGTCACATCGGTGCAGCGCCGCCGCTTTGATGAAA 376
||| || ||.||.||..||||.||.|...|||||.|.||.||||||.|||
BL03789___yes 343 GCGACA-CCGGTTTTGATCACTTCCGCAGAGCGCAGACGTTTTGATCAAA 391
BSNT_01193___ 377 ACGGACGGATCGAGCATACGCTCGGTGAGTATCCCGATGCGATGAAAGCA 426
|||||..|..||...|.||.|||||.||.|.|||..|.||||||||.||.
BL03789___yes 392 ACGGAAAGCCCGCCGACACACTCGGGGATTTTCCGAAAGCGATGAAGGCG 441
BSNT_01193___ 427 CTGGC-GAAGGAGC-TCGATGTACCTGTGATTGATCTGCTTG--CGAAAA 472
||.|| || .||| ||||.||.||..||||.|||.| .|| |.||||
BL03789___yes 442 CTCGCTGA--CAGCTTCGACGTTCCGCTGATCGATTT--ATGGTCCAAAA 487
BSNT_01193___ 473 CAAAGGTGCTGTATGAAGCATACGGGCCGGAGGAGTCGAAGCGATTGTTC 522
||||.|.|||.||||||.|...| |||.|||||| ||||
BL03789___yes 488 CAAAAGCGCTCTATGAATCTCTC--------GGAATCGAAG-----GTTC 524
BSNT_01193___ 523 A---------TTTG----GTTTCAGCCGAATGAACATCCGAATTACCCGG 559
| |||| .||||||||..||||.||.||..||||.||..
BL03789___yes 525 AAAACGGCTGTTTGTCCACTTTCAGCCTCATGAGCACCCTCATTATCCAA 574
BSNT_01193___ 560 ACGGCATTGAGGACAATACGCATTTTTCGGAAAAAGGTG-----CAATGG 604
|.||.||.||.||||||||.||||||||.|||..|||.| |||
BL03789___yes 575 ATGGAATCGAAGACAATACCCATTTTTCCGAAGCAGGGGCCCGTCAA--- 621
BSNT_01193___ 605 AGGTTGCGAAGCTTGTGGCAGAAGGCATTGAAGAGCTCGGACT------- 647
||.||.|.|||.|||.|||||||.||...||||||.||.||
BL03789___yes 622 --GTCGCCAGGCTGGTGACAGAAGGAATCAGAGAGCTTGGTCTGCCTCTA 669
BSNT_01193___ 648 --------TCCGCTT-----AAGGACCACCTTGTGAGCCGGGAGGGGAAA 684
||.|||| |||||.|...||..|.||| ||||.|.||
BL03789___yes 670 TCGGCTTATCTGCTTTGTGAAAGGAGCGATTTCCGTGCC-GGAGTGTAA- 717
BSNT_01193___ 685 GAACATGTATAA 696
BL03789___yes 717 ------------ 717
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