Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03050 and BL03798
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_03050___ggt.1.5803.seq
# -bsequence dna-align/BL03798___ggt.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03050___ggt-BL03798___ggt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03050___ggt-BL03798___ggt.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03050___ggt
# 2: BL03798___ggt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1872
# Identity: 1248/1872 (66.7%)
# Similarity: 1248/1872 (66.7%)
# Gaps: 222/1872 (11.9%)
# Score: 4046.0
#
#
#=======================================
BSNT_03050___ 1 ATGAAAAGAACGTGGAACGTCTGTTTAACAGCTCTGCTTAGT------GT 44
|||| |.|.||| |||| |.|||||| ||
BL03798___ggt 1 ATGA--------------GACGGTT----AGCT-TTCTTAGTTGTTGCGT 31
BSNT_03050___ 45 TCTGTTAGTCGCTGGAAGTGTCCCTTTTCA---CG----CGGAAGCTAAA 87
|.||.|.|.||.|.| || |.|.|||||| || ||.|||
BL03798___ggt 32 TTTGCTTGGCGGTTG--GT-TGCTTTTTCAGTCCGGTGTCGAAAG----- 73
BSNT_03050___ 88 AAACCGCCCAAAAGCTACG----ATGAG---------------TACAAAC 118
||.||| | ||||| ||
BL03798___ggt 74 --------CAGAAG----GAGTCATGAGCGGGGGAGATGGTGATA----- 106
BSNT_03050___ 119 AAGTAGATGTTGGAAAAGACGGCATGGTTGCGACCGCACATGCTCTTGCT 168
||||.|..||.||.||||||||.|||||.||.||.||.|||.|.|||||.
BL03798___ggt 107 AAGTCGCCGTCGGGAAAGACGGTATGGTGGCTACGGCCCATCCGCTTGCA 156
BSNT_03050___ 169 TCTGAAATCGGTGCTGATGTGCTGAAAAAAGGAGGAAATGCTATTGACGC 218
||..|||||||.||.||.||..|||||||.||.||.|||||.|||||.||
BL03798___ggt 157 TCAAAAATCGGAGCCGAAGTTTTGAAAAAGGGCGGGAATGCCATTGATGC 206
BSNT_03050___ 219 AGCGGTTGCCATTCAATTTGCACTCAATGTAACAGAGCCGATGATGTCAG 268
|||..||||.||.||.|..|||||.|||||||||||||||||||||||.|
BL03798___ggt 207 AGCTATTGCGATCCAGTACGCACTGAATGTAACAGAGCCGATGATGTCTG 256
BSNT_03050___ 269 GTATTGGCGGCGGCGGTTTTATGATGGTGTATGACGGAAAAACGAAGGAT 318
|.||.||||||||||||||.||||||||.||.|||||..|.||||||||.
BL03798___ggt 257 GAATCGGCGGCGGCGGTTTCATGATGGTCTACGACGGCGAGACGAAGGAA 306
BSNT_03050___ 319 ACAACGATAATCGACAGCCGTGAGCGTGCTCCAGCAGGCGCAACTCCTGA 368
||..||||.|||.|||||.|.|||||||||||.|..||.||.|..|||||
BL03798___ggt 307 ACGTCGATCATCAACAGCAGGGAGCGTGCTCCGGAGGGAGCCAAGCCTGA 356
BSNT_03050___ 369 TATGTTTCTGGACGAAAACGGCAAAGCAATTCCTTTCTCTGAACGTGT-A 417
.||||||.||||.|||.||||.||.|..|||||.||.||.|||.| || .
BL03798___ggt 357 CATGTTTTTGGATGAAGACGGAAAGGTGATTCCGTTTTCAGAAAG-GTCG 405
BSNT_03050___ 418 ACAAAAGGTACTGCCGTTGGTGTTCCAGGCACTCTGAAAGGGCTGGAAGA 467
|.|.|.||.|.|||.||.|||||.||.||.||.|||||||||||.||||.
BL03798___ggt 406 AGACACGGAAATGCGGTCGGTGTGCCGGGAACGCTGAAAGGGCTTGAAGC 455
BSNT_03050___ 468 AGC-CTTGGACAAATGGGGAACCCGTTCGATGAAGCT------ATTAATT 510
||| |.| .|.||.||||||| |.|.|||..| .||.|||
BL03798___ggt 456 AGCGCAT-AAGAAGTGGGGAA------CAAAGAAAATGGAAGACTTGATT 498
BSNT_03050___ 511 ACCCCTTCTATTAAACTCGCTGAAAAAGGCTTTCCGATTGATTCGGTGTT 560
.|.||||||||.||.||.||.||..||||.||.||.||.||.|||||.||
BL03798___ggt 499 TCGCCTTCTATAAAGCTTGCAGAGGAAGGGTTCCCAATCGACTCGGTTTT 548
BSNT_03050___ 561 GGCAGATGCCATTTCTGATTATCAGGAAAAACTTTCACGG------ACTG 604
|||.||.||.||....|||.|||||||.||.|| | ||.|
BL03798___ggt 549 GGCTGACGCGATAAAGGATCATCAGGACAAGCT------GAGCAAAACGG 592
BSNT_03050___ 605 CCGCAAAAGATGTATTTT--TACCAAATGGCGAACCGCTTAAAGAAGGAG 652
|||||||.|| |||||| |.||..|.||.|||||..|.||||||||.|
BL03798___ggt 593 CCGCAAAGGA--TATTTTCCTTCCGGACGGTGAACCTTTGAAAGAAGGCG 640
BSNT_03050___ 653 ATACCCTTATTCAAAAGGATTTGGCTAAAACATTTAAGCTTATTCGCTCC 702
|||.||||.|.||||||||||||||.|||||.|||||..|.||.||....
BL03798___ggt 641 ATATCCTTGTACAAAAGGATTTGGCCAAAACGTTTAAATTGATACGGAAA 690
BSNT_03050___ 703 AAAGGCACTGACGCTTTTTATAAAGGAAAATTCGCCAAGACGCTTTCTGA 752
.||||..|..|.||.||||||.|.||..||.|||.|..|.||.||.|.||
BL03798___ggt 691 GAAGGGTCAAAAGCCTTTTATGATGGGGAAATCGGCCGGGCGATTGCAGA 740
BSNT_03050___ 753 CACTGTC---CAGGATTTCGGCGGATCAATGACA---GAAAAAGATTTAG 796
|||| |||||||||||.||.||||||||| |
BL03798___ggt 741 ---TGTCGTGCAGGATTTCGGGGGTTCAATGACACCTG------------ 775
BSNT_03050___ 797 AAAAT------------TACGACATTACAATTGATGAACCGATTTGGGGA 834
|| |||||..|.||||..|||.|.||.||.|||||.
BL03798___ggt 776 ---ATGACCTGTCCCGCTACGAGGTCACAACAGATAAGCCCATCTGGGGC 822
BSNT_03050___ 835 GACTATCAAGGCTATCAAATCGCTACTACTCCTCCTCCAAGCTCCGGCGG 884
||.||.||.||||||.|.||.||.|..|..||||||||||||||.|||||
BL03798___ggt 823 GAGTACCACGGCTATGATATTGCAAGCATGCCTCCTCCAAGCTCAGGCGG 872
BSNT_03050___ 885 TATTTTCTTATTGCAAATGCTGAAAATCCTTGATGATTTTAACCTTTCAC 934
..|.|||.|..||||.|||||||||.|..|||||||||||.|..|.||.|
BL03798___ggt 873 AGTGTTCATGCTGCAGATGCTGAAATTGATTGATGATTTTCATTTATCGC 922
BSNT_03050___ 935 AATACGATGTCC---GCTCATGGGAAAAATATCAGCTGCTTGCTGAAACG 981
||||||| ||| | ||.|..|||||||||||.|||||.||.||||||
BL03798___ggt 923 AATACGA--TCCAAAG-TCGTTTGAAAAATATCATCTGCTCGCGGAAACG 969
BSNT_03050___ 982 ATGCATTTGTCATATGCCGACCGTGCGTCTTACGCAGGTGATCCCGAATT 1031
||||||.|.||.|||||.|||.|.||..|.||.||.||.|||||.|||||
BL03798___ggt 970 ATGCATCTCTCCTATGCGGACAGGGCTGCATATGCGGGCGATCCGGAATT 1019
BSNT_03050___ 1032 TGTAAATGTTCCTCTCAAAGGCCTGCTTCACCCCGATTATATTAAAGAAC 1081
|||..|||||||.||||.|||.|||||..|.||||||||||||||.||.|
BL03798___ggt 1020 TGTCGATGTTCCGCTCAGAGGGCTGCTCGATCCCGATTATATTAAGGAGC 1069
BSNT_03050___ 1082 GCCAGCAATTAATCAACCTAGA-TCAAGTGAATAAAAAACC-------GA 1123
|.||..|..|.||||.|||.|| ||.| || |||| ||
BL03798___ggt 1070 GGCAAAAGCTGATCAGCCTTGATTCGA-TG-------AACCGCGATGTGA 1111
BSNT_03050___ 1124 AAGCCGGTGACCCTTGGAAATACCAAGAAG--GATCAGCAAACTATAAAC 1171
|||..||.||.||.||||||||..|.|||| ||.| |.||.|||.|
BL03798___ggt 1112 AAGAGGGCGATCCGTGGAAATATGAGGAAGGCGAGC--CGAATTATGA-- 1157
BSNT_03050___ 1172 AAGTTGA-------ACAGCCGAAAGACAAAGTAGAA--GGCCAAACAACC 1212
|| .|||||..||||.||| |..| ||..|.||.||.
BL03798___ggt 1158 -----GATCGTGCCTCAGCCTGAAGATAAA--ACGATCGGGGAGACGACG 1200
BSNT_03050___ 1213 CACTTTACAGTTGCTGATCGATGGGGAAATGTTGTTTCTTACACAACAAC 1262
||.|||||.||..|.||||..|||||.||||||||.|||||.||.|||||
BL03798___ggt 1201 CATTTTACCGTCACGGATCAGTGGGGCAATGTTGTCTCTTATACGACAAC 1250
BSNT_03050___ 1263 AATCGAACAGCTATTCGGAACGGGTATTATGGTCCCTGATTACGG--TGT 1310
.||.||||||||.||.||||||||.|||.|.||.||.|..||||| |||
BL03798___ggt 1251 GATTGAACAGCTTTTTGGAACGGGGATTTTAGTGCCCGGGTACGGACTGT 1300
BSNT_03050___ 1311 TATTTTAAACAATGAATTAACGGATTTTGATGCGATACCAGGCGGAGCTA 1360
||||.|||||||||.|.||.||||||||||||||.||||||||.||.|
BL03798___ggt 1301 --TTTTGAACAATGAACTGACCGATTTTGATGCGATTCCAGGCGGCGCCA 1348
BSNT_03050___ 1361 ACGAAGTACAGCCAAACAAACGGC--CTTTAAGCAGCATGACCCCGACGA 1408
|||||||.|||||.||.|||.||| ||||.| ||||||||.|||||||
BL03798___ggt 1349 ACGAAGTGCAGCCGAATAAAAGGCCGCTTTCA--AGCATGACGCCGACGA 1396
BSNT_03050___ 1409 TTTTATTTAAGGATGACAAGCCTGTCCTCACTGTTGGATCTCCTGGCGGG 1458
|..||||.||.|||||.||.||.||.||.|||||.||.||.||||||||.
BL03798___ggt 1397 TCGTATTCAAAGATGAAAAACCGGTGCTGACTGTCGGTTCCCCTGGCGGA 1446
BSNT_03050___ 1459 GCCACAATTATTTCATCCGTTTTGCAAACCATTCTCTACCACATTGAATA 1508
.|.||.||.|||.|.||||||||.||.||.||..|..|..|..||||.||
BL03798___ggt 1447 ACGACGATCATTGCTTCCGTTTTCCAGACGATCTTGAATTATTTTGAGTA 1496
BSNT_03050___ 1509 TGGTATGGAATTAAAAGC--------AGCTGTTGAAGAGCCGAGAATTTA 1550
.||.||| ||| .||..|||||||||||||.||.||
BL03798___ggt 1497 CGGCATG--------AGCCTTCAGGATGCGATTGAAGAGCCGAGGATCTA 1538
BSNT_03050___ 1551 CACAAACAGTATGAGCTCTTACCGTTACGAAGACGGAGTTCCTAAAGATG 1600
.||.|||||..|||..||.|||||.||.|||..||||.|.||..|.||||
BL03798___ggt 1539 TACGAACAGCCTGACTTCGTACCGCTATGAATCCGGAATGCCGGAGGATG 1588
BSNT_03050___ 1601 TCCTCAGCAAGCTGAACGGTATGGGCCACAAATTCGGCACAAGTCCGGTG 1650
||....|.|||||.||.|...|.|||||||||||||||.|.|.||||||.
BL03798___ggt 1589 TCAGACGGAAGCTCAATGACTTCGGCCACAAATTCGGCTCGAATCCGGTT 1638
BSNT_03050___ 1651 GATATCGGAAACGTGCAAAGCATATCGATCGACCATGAAAACGGAACCTT 1700
||||||||.||.||.||||||||.|..||.||||..||.|||..|||.||
BL03798___ggt 1639 GATATCGGCAATGTCCAAAGCATTTTCATTGACCGGGAGAACAAAACGTT 1688
BSNT_03050___ 1701 TAAAGGCGTAGCTGATTCAAGCAGAAACGGCGCGGCGATCGG------CA 1744
||..||.||.||.|||||||||||||||||..|||||.|.|| ||
BL03798___ggt 1689 TATGGGGGTTGCCGATTCAAGCAGAAACGGAACGGCGGTTGGGGTCAACA 1738
BSNT_03050___ 1745 TTAATTTAAAACG--TAAATAA 1764
|||| .|.|.|| ||||||.
BL03798___ggt 1739 TTAA--GACATCGGCTAAATAG 1758
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