Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02095 and BL03801
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:34
# Commandline: needle
# -asequence dna-align/BSNT_02095___yjmF.1.5803.seq
# -bsequence dna-align/BL03801___yjmF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02095___yjmF-BL03801___yjmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02095___yjmF-BL03801___yjmF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02095___yjmF
# 2: BL03801___yjmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 952
# Identity: 575/952 (60.4%)
# Similarity: 575/952 (60.4%)
# Gaps: 218/952 (22.9%)
# Score: 1721.5
#
#
#=======================================
BSNT_02095___ 1 ATGATCCCACTGCATGAGAACCTGACTGGTAAAACGGCTGTCATCACTGG 50
|||.|...|.|.|||||.||..|..|.||.|||||.||.||||||||.||
BL03801___yjm 1 ATGCTTGAAATCCATGAAAATTTAGCGGGGAAAACTGCGGTCATCACAGG 50
BSNT_02095___ 51 CGGCAGCGGCGTGCTTTGCTCTGCGATGGCACGGGAGCTAGCCCGTCATG 100
|||||||||.|||||||||..|||||||||..|.|||||.|.|||.||.|
BL03801___yjm 51 CGGCAGCGGGGTGCTTTGCGGTGCGATGGCGAGAGAGCTCGGCCGGCAGG 100
BSNT_02095___ 101 GCATGAAGGTGGCGATATTGAATCGGACGGCTGAAAAAGG---------- 140
|.|||||.||.||.||..|.|||||.||.|.|||||||||
BL03801___yjm 101 GTATGAATGTTGCCATTCTTAATCGAACCGTTGAAAAAGGGGAACTCGTG 150
BSNT_02095___ 141 --CCAAGCGGTCGTGAAGGAGATAACGGCGGCTGGCGGCACAGCGTGCGC 188
|.||||.||| .||.|| ||.||||||.|||||
BL03801___yjm 151 GCCGAAGCTGTC-------CGAAAA-----GCCGGCGGCGCAGCG----- 183
BSNT_02095___ 189 TGTTGCTGCGGA-TGTGCTGGACAGGATGTCA--------------CTGG 223
.||||.|..|| ||| ||||||| .|.|
BL03801___yjm 184 -ATTGCAGTTGAGTGT---------GATGTCATCAGCCAACGGAGCGTTG 223
BSNT_02095___ 224 AACGGGC-AAAGGAAGACATCCTT------GGCCAATTTGGC-GCTGTTG 265
|||.||| |||.| |.|| |.||.|||.||| |||| ||
BL03801___yjm 224 AACAGGCGAAACG-------CGTTGTGGCCGACCGATTCGGCGGCTG-TG 265
BSNT_02095___ 266 ATCTGTTAATTAACGGGGCTGGCGGCAATCATCC---TGACGCGATAACC 312
||||.||..|.|||||.||.|||||||||||.|| ||.|.|||.|.|.
BL03801___yjm 266 ATCTATTGGTGAACGGAGCCGGCGGCAATCACCCCAATGGCACGACATCA 315
BSNT_02095___ 313 GATGTGGAGACATATGAA----GAAG---------CGGGAGAAGGCCAA- 348
||| ||.|||| |.|| | || |.|||.||...|||
BL03801___yjm 316 GAT---GAAACAT-TCAACTCCG-AGCACATCTTCCAGGACAACATCAAG 360
BSNT_02095___ 349 TCCTTTTTTGATATG------GATGA-GAGGGGCTTTCTAACTGTATTCT 391
.|.||.||||||.|| ||||| |..|| ||| |.||||
BL03801___yjm 361 ACGTTATTTGATCTGAACTGCGATGATGTCGG---TTC------TGTTCT 401
BSNT_02095___ 392 CCACCAAT------TTCACCGGTGCGTTTC-TGGCCTC-------GCAAG 427
|||| |||..||||.| |||| | || ||||
BL03801___yjm 402 ----CAATTTAAACTTCCTCGGTTC-TTTCAT----TCCAACACAGCAA- 441
BSNT_02095___ 428 TGTTTGGAAAAGAGCTGCTGAAAGCCGATTCA-----------CCGGCGA 466
||||.||||..|.||||||| ||| |||
BL03801___yjm 442 --TTTGCAAAAATGATGCTGAA-------TCAAAAAGGGGCGTCCG---- 478
BSNT_02095___ 467 TCATCAACCTTTCTTCCATGAGTGCTTATTCACCTATGACGAAGGTTCCG 516
|.|||||..|||||||.|||||.|||.|..|.||.||||||||.||.||.
BL03801___yjm 479 TGATCAATATTTCTTCAATGAGCGCTCAAACCCCGATGACGAAAGTGCCT 528
BSNT_02095___ 517 GCATACAGTGCCGCGAAAGCATCCATCAATAATTTTACGATGTGGATGGC 566
||||||||.||.||||||||...||||.|.||||||||||..|||.||||
BL03801___yjm 529 GCATACAGCGCGGCGAAAGCGGGCATCGACAATTTTACGAAATGGCTGGC 578
BSNT_02095___ 567 TGTTCATTTTGCCGAAACCGGGCTGCGGGTCAATGCGATTGCCCCAGGCT 616
.||..||.|.||||||||.||..|..|||||||.||.||||||||.||.|
BL03801___yjm 579 CGTCTATCTGGCCGAAACGGGAATCAGGGTCAACGCCATTGCCCCGGGAT 628
BSNT_02095___ 617 TCTTTCTGACAAAACAAAATCATGA------TCTGC-TGATCAACCAAGA 659
|.||.||.||.||.|||| |||| |||.| |||||||
BL03801___yjm 629 TTTTCCTAACCAATCAAA---ATGAAAGGCTTCTTCTTGATCAA------ 669
BSNT_02095___ 660 CGGAACG-----TTCAC----------CAGCCGA-----TCTCACAAAAT 689
|||| ||.|| .||..|| ||||||
BL03801___yjm 670 ---AACGGCGAATTTACAGATAGAGCAAAGAAGATCATCTCTCAC----- 711
BSNT_02095___ 690 TATTGCGGGAACACCGATGAAGCGCTTCGGAAAACCCGAGGATTTGCTCG 739
||.|||||||.|||.|||||.|||||.||.||||||||.|
BL03801___yjm 712 ----------ACCCCGATGAGGCGTTTCGGCAAACCGGAAGATTTGCTGG 751
BSNT_02095___ 740 GTACGCTTCTTTGGCTGGCGGATGA----ATCCTATTCGGGTTTTGTCAC 785
|.|||||.||||||||||||||||| || .||.||.|||||.||
BL03801___yjm 752 GGACGCTGCTTTGGCTGGCGGATGAGAAGAT----GTCCGGATTTGTTAC 797
BSNT_02095___ 786 TGGGATCACCGTTCCTGTCGATGGAGGATTTATGGCTTATTCAGGTGTGT 835
.||.||.||.||.||.||.|||||.|||||||.|||||||.|.|||||.|
BL03801___yjm 798 CGGCATAACAGTGCCGGTAGATGGCGGATTTACGGCTTATGCCGGTGTCT 847
BSNT_02095___ 836 AA 837
||
BL03801___yjm 848 AA 849
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