Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02165 and BL03805

See Amino acid alignment / Visit BSNT_02165 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:39
# Commandline: needle
#    -asequence dna-align/BSNT_02165___xhlA.1.5803.seq
#    -bsequence dna-align/BL03805.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02165___xhlA-BL03805.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02165___xhlA-BL03805.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02165___xhlA
# 2: BL03805
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 276
# Identity:     191/276 (69.2%)
# Similarity:   191/276 (69.2%)
# Gaps:          12/276 ( 4.3%)
# Score: 619.0
# 
#
#=======================================

BSNT_02165___      1 ATGCAGCAAGAGGCAGATGTGAATGTGTTTCAGCAAGA--TTTATTAGAC     48
                     ||||.|.|||...||||..||.||.|.||.||..||||  ||.|  .||.
BL03805            1 ATGCCGGAAGCACCAGAACTGGATATATTCCAAAAAGAAGTTCA--GGAG     48

BSNT_02165___     49 ATGAAAGGCGAGCACAAAGCACTTGAGCAGAGGGTTTCTGCATT----AG     94
                     |||||||..||.||.|||.||||.||.|||.|.||...|.||.|    ||
BL03805           49 ATGAAAGCTGATCAAAAATCACTCGAACAGCGCGTCAGTACACTCGAAAG     98

BSNT_02165___     95 AACGCGTGTCTGACCGGCAAGACCAGCAAATCATGACGCTGAACGAAAAA    144
                     |||    .||.|||||.||.||.|||||||||||..||.|.||||||||.
BL03805           99 AAC----ATCAGACCGCCACGATCAGCAAATCATCTCGATTAACGAAAAG    144

BSNT_02165___    145 TTAAACAAAATTGAAGAAAACACCACGTGGATTAAACGCACCATCACAGG    194
                     .|.||||||||.|||||.||.||.||.||||||||.||||.|||||||||
BL03805          145 CTGAACAAAATCGAAGAGAATACAACCTGGATTAAGCGCAGCATCACAGG    194

BSNT_02165___    195 TGCCATCATTACAGCAGTGTCTACAGGCATCATTGGCGGAGCCATCGCCA    244
                     .||.||.||||||||.||....||.||||||||.|||||.||.|||||..
BL03805          195 CGCGATAATTACAGCGGTCAGCACCGGCATCATCGGCGGCGCGATCGCTG    244

BSNT_02165___    245 TTATGTACAGCCTGCTGCAGCATTAA    270
                     ||.|.||.|...|..|||||.|.|||
BL03805          245 TTTTTTATAATTTATTGCAGAAATAA    270


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.